Wall clock time and date at job start Thu Apr 9 2020 11:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.86116 * 322.65941 * 11 10 9 13 13 C 1.54630 * 110.97321 * 86.45561 * 11 10 9 14 14 C 1.51277 * 104.19742 * 142.91323 * 13 11 10 15 15 O 1.21277 * 124.94029 * 163.78342 * 14 13 11 16 16 N 1.34419 * 110.11576 * 343.75056 * 14 13 11 17 17 C 1.46503 * 124.34812 * 179.57629 * 16 14 13 18 18 C 1.52999 * 117.49691 * 8.58933 * 17 16 14 19 19 C 1.53000 * 60.00040 * 252.51577 * 18 17 16 20 20 C 1.46762 * 111.30374 * 359.59031 * 16 14 13 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 25 25 H 1.09000 * 110.48309 * 261.59633 * 13 11 10 26 26 H 1.08997 * 110.48096 * 24.09982 * 13 11 10 27 27 H 1.08994 * 115.55129 * 154.30625 * 17 16 14 28 28 H 1.08994 * 117.50170 * 0.02562 * 18 17 16 29 29 H 1.08999 * 117.49762 * 145.02819 * 18 17 16 30 30 H 1.09006 * 117.49844 * 252.50805 * 19 18 17 31 31 H 1.08998 * 117.50194 * 107.49781 * 19 18 17 32 32 H 1.09000 * 110.24659 * 258.01945 * 20 16 14 33 33 H 1.08995 * 110.24909 * 136.01786 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.6082 -4.8623 0.6164 13 6 1.1635 -5.3506 -1.4425 14 6 1.3592 -6.8505 -1.4254 15 8 0.9345 -7.6160 -2.2647 16 7 2.0728 -7.2113 -0.3449 17 6 2.4356 -8.5924 -0.0174 18 6 2.1459 -9.6669 -1.0673 19 6 1.2956 -9.5890 0.2023 20 6 2.4417 -6.0441 0.4646 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8405 -3.5487 -0.7819 25 1 0.1293 -5.1034 -1.6825 26 1 1.8419 -4.8834 -2.1563 27 1 3.3322 -8.7113 0.5909 28 1 1.6858 -9.3462 -2.0019 29 1 2.8521 -10.4930 -1.1501 30 1 1.4425 -10.3639 0.9547 31 1 0.2758 -9.2172 0.1031 32 1 3.4821 -5.7735 0.2842 33 1 2.2836 -6.2534 1.5225 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591747708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:51 Heat of formation + Delta-G solvation = -0.969579 kcal Electronic energy + Delta-G solvation = -15169.043409 eV Core-core repulsion = 12616.629205 eV Total energy + Delta-G solvation = -2552.414205 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52538 -36.90245 -36.56108 -34.13669 -32.32133 -29.50274 -27.46823 -25.71335 -22.88961 -22.44814 -21.91837 -20.86558 -19.02373 -16.85322 -16.59075 -16.17033 -15.46528 -14.70473 -14.47149 -14.04473 -13.75522 -13.54681 -13.24403 -12.91137 -12.40688 -12.20892 -11.68672 -11.57923 -11.29854 -11.15008 -10.79543 -10.76034 -10.73414 -10.48534 -10.02556 -9.46351 -9.28719 -8.55225 -8.44737 -7.50498 -6.10030 -4.12728 2.64029 2.93645 3.28848 3.35108 3.38240 3.80130 4.35397 4.47689 4.73223 4.77935 4.92262 4.93418 5.00943 5.25945 5.27332 5.47404 5.58497 5.60625 5.75226 5.77957 5.93367 6.06147 6.22137 6.23339 6.72495 7.08277 7.18627 7.30101 7.67460 8.01414 8.19761 8.28173 8.44556 8.95700 9.52735 11.00925 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.070380 B = 0.005003 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.747036 B = 5594.949632 C = 5727.673339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.675 5.675 11 C 0.082 3.918 12 H 0.095 0.905 13 C -0.186 4.186 14 C 0.522 3.478 15 O -0.539 6.539 16 N -0.593 5.593 17 C 0.082 3.918 18 C -0.193 4.193 19 C -0.193 4.193 20 C 0.112 3.888 21 H 0.262 0.738 22 H 0.030 0.970 23 H -0.008 1.008 24 H 0.334 0.666 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -14.414 0.876 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.304 5.304 11 C -0.031 4.031 12 H 0.113 0.887 13 C -0.228 4.228 14 C 0.311 3.689 15 O -0.417 6.417 16 N -0.326 5.326 17 C -0.022 4.022 18 C -0.230 4.230 19 C -0.231 4.231 20 C -0.011 4.011 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.010 0.990 24 H 0.152 0.848 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.163 -14.693 1.159 15.315 hybrid contribution 0.050 0.905 -0.772 1.191 sum 4.213 -13.787 0.386 14.422 Atomic orbital electron populations 1.69956 1.06102 1.26954 1.50534 1.24982 0.94873 0.99422 0.95171 0.86468 0.79675 0.82915 0.78160 1.20582 1.19820 1.21284 1.21150 0.93552 0.90126 1.50868 0.91861 1.19616 0.90514 0.86958 0.96175 1.60644 1.20607 1.00260 1.48935 1.22489 0.96565 0.90903 0.93103 0.88675 1.23235 1.05404 0.92778 1.01431 1.21043 0.76452 0.91199 0.80188 1.90554 1.51870 1.58277 1.41020 1.47749 1.53696 1.05744 1.25375 1.21485 0.98812 0.78151 1.03776 1.23747 1.03151 0.99347 0.96754 1.23337 0.97189 1.02209 1.00388 1.22226 0.99997 0.83526 0.95368 0.92802 0.95164 0.99048 0.84777 0.88135 0.87752 0.85453 0.85111 0.88753 0.88367 0.88789 0.90327 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.98 9.32 -34.44 -0.32 -14.30 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.19 4.71 5.31 -4.98 -0.03 4.68 16 10 N -0.67 -12.85 6.31 -106.26 -0.67 -13.52 16 11 C 0.08 1.29 3.43 -66.08 -0.23 1.06 16 12 H 0.10 1.55 7.92 -51.93 -0.41 1.14 16 13 C -0.19 -2.88 6.51 -26.74 -0.17 -3.05 16 14 C 0.52 8.34 7.88 -10.86 -0.09 8.26 16 15 O -0.54 -9.94 14.68 5.56 0.08 -9.86 16 16 N -0.59 -8.09 3.27 -164.85 -0.54 -8.63 16 17 C 0.08 0.95 6.88 -67.93 -0.47 0.48 16 18 C -0.19 -2.28 9.77 -26.73 -0.26 -2.54 16 19 C -0.19 -2.13 10.34 -26.73 -0.28 -2.41 16 20 C 0.11 1.45 7.08 -3.12 -0.02 1.43 16 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 22 H 0.03 0.80 8.09 -51.92 -0.42 0.38 16 23 H -0.01 -0.21 8.14 -51.93 -0.42 -0.64 16 24 H 0.33 6.07 8.20 -39.29 -0.32 5.75 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 26 H 0.10 1.57 7.65 -51.93 -0.40 1.18 16 27 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.13 1.95 5.29 -51.93 -0.27 1.67 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -29.94 278.73 -7.92 -37.86 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.75 Total: 4.07 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.96 Total: -4.90 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.47 Total: -47.40 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.94 -7.92 -37.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591747708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.886 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds