Wall clock time and date at job start Thu Apr 9 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.46868 * 2 1 4 4 N 1.40519 * 127.02938 * 265.15545 * 3 2 1 5 5 H 0.97000 * 126.60366 * 359.97438 * 4 3 2 6 6 C 1.35022 * 106.79118 * 180.24359 * 4 3 2 7 7 C 1.50705 * 125.30359 * 179.73422 * 6 4 3 8 8 N 1.30830 * 109.40020 * 359.76654 * 6 4 3 9 9 C 1.34214 * 110.10228 * 0.02562 * 8 6 4 10 10 N 1.32881 * 126.11328 * 179.97438 * 9 8 6 11 11 C 1.34146 * 120.00233 * 0.02562 * 10 9 8 12 12 O 1.22063 * 120.00347 * 0.02562 * 11 10 9 13 13 C 1.46404 * 119.99830 * 179.72807 * 11 10 9 14 14 H 1.08002 * 119.99696 * 0.28023 * 13 11 10 15 15 C 1.40097 * 119.99978 * 180.27373 * 13 11 10 16 16 N 1.30634 * 119.99971 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00103 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46793 * 60.00205 * 17 15 13 19 19 H 1.48494 * 109.47228 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47130 * 300.00416 * 17 15 13 21 21 H 1.08994 * 109.47402 * 300.00166 * 1 2 3 22 22 H 1.09006 * 109.47280 * 60.00373 * 1 2 3 23 23 H 1.09000 * 109.47409 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46783 * 240.00170 * 2 1 3 25 25 H 1.08999 * 109.46689 * 120.00246 * 2 1 3 26 26 H 1.08999 * 109.46879 * 270.01729 * 7 6 4 27 27 H 1.08999 * 109.46627 * 30.01248 * 7 6 4 28 28 H 1.08998 * 109.47345 * 150.01301 * 7 6 4 29 29 H 0.96999 * 119.99885 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3896 2.1475 -1.1178 5 1 2.3730 1.8634 -2.0451 6 6 2.7798 3.3532 -0.6519 7 6 3.2691 4.4982 -1.5009 8 7 2.6677 3.3726 0.6514 9 6 2.2044 2.1925 1.0921 10 7 1.9722 1.8661 2.3591 11 6 2.2026 2.7577 3.3346 12 8 2.6252 3.8690 3.0583 13 6 1.9410 2.4000 4.7299 14 1 1.5668 1.4168 4.9743 15 6 2.1763 3.3331 5.7481 16 7 2.6285 4.5225 5.4525 17 14 1.8432 2.8765 7.5286 18 1 2.6847 1.7129 7.9069 19 1 2.1699 4.0300 8.4049 20 1 0.4096 2.5238 7.6894 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.3506 4.4279 -1.6172 27 1 2.7946 4.4523 -2.4811 28 1 3.0161 5.4423 -1.0186 29 1 2.7910 5.1686 6.1574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912166278.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:27 Heat of formation + Delta-G solvation = 91.621383 kcal Electronic energy + Delta-G solvation = -15175.412484 eV Core-core repulsion = 12523.472981 eV Total energy + Delta-G solvation = -2651.939503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.31118 -36.53174 -34.83063 -33.06502 -31.97220 -31.05603 -29.84043 -27.72508 -26.11050 -23.32593 -21.46164 -20.92463 -18.77464 -17.70173 -16.04161 -15.57020 -15.21876 -14.97094 -14.23943 -13.70299 -13.58434 -13.35436 -12.77239 -12.52010 -12.41468 -11.98967 -11.75934 -11.15654 -11.05068 -10.87362 -10.39416 -10.13819 -9.88379 -9.62725 -9.37021 -8.57829 -8.43745 -6.93148 -6.70932 -5.90452 -4.29948 1.81227 1.83503 3.30688 3.33561 3.37602 3.81852 4.10550 4.32910 4.61812 4.91608 5.04432 5.12255 5.24186 5.40640 5.48051 5.62144 5.83264 5.88846 5.94762 6.21986 6.34509 6.45982 6.63961 7.34933 7.67623 7.88073 8.55193 8.65594 9.12161 9.26322 9.63935 10.85753 11.23005 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.007942 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.380795 B = 3524.797243 C = 4249.947357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.159 3.841 3 N -0.439 5.439 4 N -0.522 5.522 5 H 0.435 0.565 6 C 0.349 3.651 7 C -0.077 4.077 8 N -0.501 5.501 9 C 0.550 3.450 10 N -0.612 5.612 11 C 0.504 3.496 12 O -0.555 6.555 13 C -0.495 4.495 14 H 0.069 0.931 15 C 0.076 3.924 16 N -0.765 5.765 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -5.991 -16.308 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.037 3.963 3 N -0.252 5.252 4 N -0.252 5.252 5 H 0.280 0.720 6 C 0.072 3.928 7 C -0.136 4.136 8 N -0.235 5.235 9 C 0.190 3.810 10 N -0.368 5.368 11 C 0.306 3.694 12 O -0.436 6.436 13 C -0.532 4.532 14 H 0.087 0.913 15 C -0.142 4.142 16 N -0.395 5.395 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.092 0.908 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.018 -5.503 -15.138 16.139 hybrid contribution -0.217 -0.566 -0.276 0.666 sum -1.235 -6.069 -15.414 16.611 Atomic orbital electron populations 1.22247 0.95507 1.02256 1.03105 1.21433 0.94420 0.76964 1.03452 1.47696 1.68776 1.11267 0.97502 1.44688 1.66330 1.11104 1.03082 0.71994 1.24145 0.90622 0.85430 0.92627 1.20460 1.02089 0.94031 0.97067 1.72184 1.23911 1.21828 1.05543 1.21174 0.89535 0.81479 0.88787 1.69880 1.33307 1.39747 0.93899 1.18858 0.79545 0.83714 0.87247 1.90721 1.44766 1.23753 1.84371 1.20852 1.42987 0.99871 0.89466 0.91259 1.25836 0.93586 0.94396 1.00366 1.70049 1.32153 1.04091 1.33233 0.86438 0.79451 0.78453 0.82366 1.19343 1.20715 1.19352 0.90772 0.93151 0.91140 0.90923 0.87874 0.88898 0.90232 0.87849 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 15 2 C 0.16 2.11 7.20 -4.04 -0.03 2.08 15 3 N -0.44 -7.69 3.73 -62.09 -0.23 -7.92 15 4 N -0.52 -6.89 7.36 32.72 0.24 -6.65 15 5 H 0.43 3.39 8.96 -182.28 -1.63 1.76 15 6 C 0.35 5.61 8.17 -155.16 -1.27 4.34 15 7 C -0.08 -0.76 10.51 36.01 0.38 -0.38 15 8 N -0.50 -12.11 9.20 -11.06 -0.10 -12.21 15 9 C 0.55 13.58 8.40 -321.61 -2.70 10.88 15 10 N -0.61 -17.75 10.44 -14.31 -0.15 -17.90 15 11 C 0.50 16.95 7.67 -13.26 -0.10 16.85 15 12 O -0.56 -20.11 13.57 4.86 0.07 -20.04 15 13 C -0.50 -16.11 9.64 -35.60 -0.34 -16.45 15 14 H 0.07 2.13 7.85 -52.49 -0.41 1.71 15 15 C 0.08 2.35 5.50 -17.36 -0.10 2.26 15 16 N -0.76 -24.87 11.82 55.55 0.66 -24.22 15 17 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 15 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.10 1.51 8.14 -51.93 -0.42 1.09 15 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 15 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.27 7.80 8.29 -40.82 -0.34 7.46 15 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -44.70 264.56 -8.90 -53.60 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.56 Total: -3.44 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: -3.78 Total: 17.83 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: 0.41 Total: -68.91 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.07 Total: -20.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -44.70 -8.90 -53.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912166278.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.219 kcal (2) G-P(sol) polarization free energy of solvation -44.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds