Wall clock time and date at job start Thu Apr 9 2020 11:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48505 * 109.46619 * 269.99245 * 3 2 1 5 5 H 1.48496 * 109.47356 * 29.99266 * 3 2 1 6 6 H 1.48497 * 109.47253 * 149.99856 * 3 2 1 7 7 C 1.37877 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00586 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99522 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46857 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47180 * 180.02562 * 10 9 7 12 12 C 1.34227 * 117.00435 * 180.02562 * 11 10 9 13 13 O 1.20832 * 119.99313 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00654 * 179.97438 * 12 11 10 15 15 C 1.52998 * 119.75628 * 249.84443 * 14 12 11 16 16 C 1.53002 * 60.37718 * 248.87179 * 15 14 12 17 17 H 1.09004 * 119.29734 * 111.29991 * 16 15 14 18 18 C 1.54264 * 118.69060 * 266.65085 * 16 15 14 19 19 C 1.54336 * 104.46263 * 87.01709 * 18 16 15 20 20 C 1.54266 * 117.41024 * 45.29148 * 14 12 11 21 21 H 0.97000 * 119.99504 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47171 * 59.99638 * 9 7 2 23 23 H 1.08994 * 109.47087 * 299.98953 * 9 7 2 24 24 H 1.08998 * 109.47074 * 59.99534 * 10 9 7 25 25 H 1.09007 * 109.47045 * 300.00099 * 10 9 7 26 26 H 1.08997 * 117.46048 * 356.46947 * 15 14 12 27 27 H 1.08993 * 117.46418 * 141.27614 * 15 14 12 28 28 H 1.08990 * 110.48951 * 206.50264 * 18 16 15 29 29 H 1.09002 * 110.48273 * 329.14693 * 18 16 15 30 30 H 1.09001 * 111.00483 * 204.22397 * 19 18 16 31 31 H 1.09000 * 110.25312 * 81.02680 * 19 18 16 32 32 H 1.09001 * 110.48620 * 235.05212 * 20 14 12 33 33 H 1.09004 * 110.48798 * 357.69046 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 -0.0001 12 6 2.2501 -6.0453 0.0004 13 8 3.4568 -5.9821 0.0008 14 6 1.5660 -7.3881 0.0004 15 6 1.6287 -8.2722 1.2475 16 6 2.3737 -8.6976 -0.0194 17 1 3.4637 -8.6912 -0.0248 18 6 1.6641 -9.6381 -1.0153 19 6 0.8707 -8.6916 -1.9408 20 6 0.3855 -7.5837 -0.9733 21 1 -0.4849 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6044 0.8905 25 1 2.8719 -3.6044 -0.8895 26 1 2.2264 -7.9162 2.0865 27 1 0.7309 -8.8299 1.5138 28 1 2.3947 -10.2165 -1.5806 29 1 0.9756 -10.3002 -0.4903 30 1 0.0237 -9.2072 -2.3935 31 1 1.5256 -8.2761 -2.7066 32 1 -0.5036 -7.9105 -0.4341 33 1 0.1844 -6.6618 -1.5191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924429934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:45 Heat of formation + Delta-G solvation = -97.807499 kcal Electronic energy + Delta-G solvation = -15047.368459 eV Core-core repulsion = 12458.462296 eV Total energy + Delta-G solvation = -2588.906163 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.90826 -39.96156 -37.63516 -35.48431 -32.71455 -32.39242 -29.62190 -27.24617 -25.00174 -23.37517 -22.80971 -21.42439 -20.40761 -18.81604 -18.10496 -17.77763 -17.56735 -16.56525 -15.96543 -15.40374 -14.98292 -14.42440 -14.33534 -14.13977 -13.97366 -13.23542 -13.15408 -12.84301 -12.64457 -12.57518 -12.15917 -12.07566 -11.94641 -11.78906 -11.55797 -11.53269 -11.43275 -11.08920 -10.76768 -10.64188 -8.29633 -6.43623 1.02080 1.39144 1.41654 1.52364 1.66628 2.38115 2.50623 3.04542 3.40387 3.52694 3.65031 3.84602 4.13903 4.18677 4.20338 4.36642 4.45534 4.60554 4.62396 4.67094 4.76441 4.92993 5.00157 5.16574 5.19419 5.23087 5.24169 5.40883 5.43639 5.50642 5.69890 6.02639 6.66493 6.71078 7.26378 8.83119 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.060037 B = 0.004972 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.267347 B = 5629.914226 C = 5811.256481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.089 3.911 11 O -0.360 6.360 12 C 0.492 3.508 13 O -0.548 6.548 14 C -0.186 4.186 15 C -0.102 4.102 16 C -0.119 4.119 17 H 0.108 0.892 18 C -0.088 4.088 19 C -0.122 4.122 20 C -0.083 4.083 21 H 0.269 0.731 22 H 0.006 0.994 23 H 0.007 0.993 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -19.217 -0.849 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.016 3.984 11 O -0.276 6.276 12 C 0.337 3.663 13 O -0.439 6.439 14 C -0.187 4.187 15 C -0.138 4.138 16 C -0.137 4.137 17 H 0.126 0.874 18 C -0.125 4.125 19 C -0.159 4.159 20 C -0.121 4.121 21 H 0.078 0.922 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.117 0.883 27 H 0.157 0.843 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.785 -19.036 -0.865 19.072 hybrid contribution 0.598 1.528 0.020 1.641 sum 1.383 -17.508 -0.844 17.583 Atomic orbital electron populations 1.70097 1.07839 1.28371 1.50186 1.25976 0.95863 1.03434 0.93897 0.85294 0.78494 0.77595 0.78742 1.19444 1.20170 1.18793 1.21361 0.93654 0.91220 1.52854 0.91800 1.18971 0.94253 0.90537 0.96683 1.23187 0.95190 0.79281 1.00750 1.86514 1.42524 1.15685 1.82870 1.23200 0.85573 0.86669 0.70813 1.90584 1.16980 1.88537 1.47810 1.22090 1.03500 0.85644 1.07500 1.23354 1.03453 0.97153 0.89879 1.23702 0.98974 0.91875 0.99192 0.87381 1.21949 0.99015 0.96278 0.95242 1.22630 1.00410 0.95536 0.97318 1.21968 0.95138 0.99725 0.95237 0.92235 0.97538 0.97484 0.92384 0.92478 0.88312 0.84308 0.89379 0.88460 0.88176 0.92606 0.88273 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.03 1.83 5.35 29.85 0.16 1.99 16 10 C 0.09 4.28 5.40 71.98 0.39 4.67 16 11 O -0.36 -15.77 10.05 -51.39 -0.52 -16.28 16 12 C 0.49 18.96 7.53 71.23 0.54 19.50 16 13 O -0.55 -23.67 16.54 21.95 0.36 -23.31 16 14 C -0.19 -5.07 2.75 -52.21 -0.14 -5.21 16 15 C -0.10 -2.03 9.89 30.59 0.30 -1.73 16 16 C -0.12 -2.48 6.53 -10.07 -0.07 -2.55 16 17 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 18 C -0.09 -1.25 6.61 31.48 0.21 -1.04 16 19 C -0.12 -2.05 6.88 31.69 0.22 -1.84 16 20 C -0.08 -1.88 6.39 31.67 0.20 -1.68 16 21 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 25 H 0.06 2.71 8.13 -2.38 -0.02 2.70 16 26 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.55 7.90 -2.38 -0.02 1.53 16 Total: -1.00 -69.14 284.28 5.74 -63.41 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.08 Total: 4.81 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 2.50 Total: -18.97 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.28 Total: -55.83 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.15 Total: -39.59 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -69.14 5.74 -63.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924429934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.402 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds