Wall clock time and date at job start Thu Apr 9 2020 11:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48494 * 109.47279 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46962 * 119.99611 * 3 2 1 7 7 C 1.38820 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99632 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85192 * 336.19119 * 10 9 7 12 12 C 1.53784 * 113.61473 * 107.50035 * 10 9 7 13 13 C 1.53785 * 87.08226 * 139.98004 * 12 10 9 14 14 H 1.08998 * 113.69285 * 89.12810 * 13 12 10 15 15 N 1.46495 * 113.61369 * 220.01939 * 13 12 10 16 16 C 1.34783 * 120.00138 * 252.49401 * 15 13 12 17 17 O 1.21280 * 119.99508 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00171 * 179.97438 * 16 15 13 19 19 C 1.53000 * 117.49604 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49669 * 248.62535 * 18 16 15 21 21 C 1.53784 * 87.07871 * 334.56462 * 13 12 10 22 22 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00437 * 359.97438 * 9 7 2 24 24 H 1.08997 * 113.61830 * 25.42799 * 12 10 9 25 25 H 1.09002 * 113.61248 * 254.52451 * 12 10 9 26 26 H 0.96998 * 120.00377 * 72.49248 * 15 13 12 27 27 H 1.09002 * 115.56044 * 34.30916 * 18 16 15 28 28 H 1.08990 * 117.49990 * 359.97438 * 19 18 16 29 29 H 1.09004 * 117.49237 * 214.97804 * 19 18 16 30 30 H 1.08999 * 117.49685 * 145.02383 * 20 18 16 31 31 H 1.08997 * 117.50044 * 359.97438 * 20 18 16 32 32 H 1.08999 * 113.61159 * 139.98283 * 21 13 12 33 33 H 1.08995 * 113.61920 * 270.80246 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0658 -3.5640 -0.4031 12 6 1.9980 -4.4015 1.3458 13 6 1.8475 -5.6974 0.5315 14 1 2.7975 -6.1646 0.2722 15 7 0.8866 -6.6427 1.1053 16 6 1.3238 -7.7699 1.7009 17 8 2.5127 -8.0014 1.7623 18 6 0.3354 -8.7421 2.2917 19 6 0.8944 -10.0027 2.9545 20 6 0.3070 -8.8827 3.8149 21 6 1.2604 -4.8291 -0.5938 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 1.1194 -4.1560 1.9422 25 1 2.9258 -4.3493 1.9157 26 1 -0.0642 -6.4574 1.0565 27 1 -0.6123 -8.8305 1.7604 28 1 1.9769 -10.1290 2.9630 29 1 0.3146 -10.9208 2.8590 30 1 -0.6592 -9.0637 4.2857 31 1 1.0035 -8.2724 4.3897 32 1 1.5926 -5.1219 -1.5897 33 1 0.1799 -4.7016 -0.5285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021758040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:01 Heat of formation + Delta-G solvation = 15.202774 kcal Electronic energy + Delta-G solvation = -14863.900688 eV Core-core repulsion = 12312.187769 eV Total energy + Delta-G solvation = -2551.712919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02888 -38.25037 -36.06841 -34.05676 -32.64643 -29.89040 -25.49490 -25.11777 -23.86808 -22.60629 -21.63040 -20.19424 -19.15138 -17.45293 -17.10139 -16.16931 -15.28001 -14.82670 -14.64366 -14.18708 -14.09233 -13.04263 -12.99037 -12.58612 -12.14073 -11.91499 -11.74049 -11.26651 -10.93979 -10.81496 -10.74013 -10.56461 -10.48851 -10.32446 -10.07789 -9.74168 -9.55645 -8.90948 -8.73054 -6.99347 -5.80811 -3.09692 2.53371 3.24837 3.43004 3.47436 3.48436 3.74052 4.56504 4.59129 4.68060 4.72467 5.00023 5.06850 5.24205 5.37484 5.40562 5.47318 5.57166 5.77259 5.86411 5.94230 5.96103 6.12811 6.25271 6.31163 6.52855 6.61087 6.76039 7.06757 7.66934 7.67819 8.33652 8.37787 9.49039 10.05674 10.40379 11.41577 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.063833 B = 0.004631 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.537526 B = 6044.330364 C = 6120.782258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.108 0.892 15 N -0.710 5.710 16 C 0.540 3.460 17 O -0.548 6.548 18 C -0.195 4.195 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.158 4.158 22 H 0.256 0.744 23 H 0.385 0.615 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.400 0.600 27 H 0.122 0.878 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -16.658 3.712 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.012 3.988 14 H 0.126 0.874 15 N -0.359 5.359 16 C 0.326 3.674 17 O -0.426 6.426 18 C -0.216 4.216 19 C -0.187 4.187 20 C -0.191 4.191 21 C -0.198 4.198 22 H 0.066 0.934 23 H 0.219 0.781 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.235 0.765 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.569 -16.612 3.720 17.033 hybrid contribution -0.493 1.052 -0.014 1.162 sum -1.062 -15.560 3.706 16.030 Atomic orbital electron populations 1.69648 1.05168 1.25904 1.57434 1.24761 0.95526 0.97799 1.02701 0.86250 0.78542 0.83369 0.77926 1.21180 1.21671 1.21185 1.19285 0.91145 0.84177 1.43085 0.91022 1.42347 1.05673 0.99759 1.87026 1.21352 0.95489 0.84936 0.92633 0.90210 1.24331 1.01813 0.95160 1.00510 1.22510 0.93275 0.87496 0.95558 0.87364 1.45986 1.10544 1.21208 1.58122 1.19663 0.88650 0.81455 0.77638 1.90672 1.17130 1.76210 1.58587 1.22236 1.01251 1.00641 0.97504 1.22922 1.02327 0.91720 1.01751 1.22921 1.03293 1.02337 0.90523 1.23863 1.01203 0.97337 0.97438 0.93394 0.78096 0.90208 0.92297 0.76546 0.85981 0.87471 0.88098 0.87863 0.88215 0.91515 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.60 5.40 -52.64 -0.28 -17.88 16 10 C 0.17 3.31 4.48 -67.12 -0.30 3.01 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.18 -3.13 7.68 -25.91 -0.20 -3.33 16 13 C 0.12 1.79 4.24 -67.12 -0.28 1.51 16 14 H 0.11 1.76 7.46 -51.93 -0.39 1.37 16 15 N -0.71 -9.44 5.35 -53.01 -0.28 -9.72 16 16 C 0.54 7.60 7.61 -10.98 -0.08 7.52 16 17 O -0.55 -9.80 15.86 5.56 0.09 -9.71 16 18 C -0.20 -1.99 6.19 -91.77 -0.57 -2.56 16 19 C -0.15 -1.39 10.04 -26.75 -0.27 -1.66 16 20 C -0.15 -1.38 10.23 -26.75 -0.27 -1.65 16 21 C -0.16 -2.52 7.58 -25.92 -0.20 -2.72 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.38 10.02 7.93 -40.82 -0.32 9.70 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.40 4.38 8.73 -40.82 -0.36 4.02 16 27 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -31.81 285.18 -7.71 -39.53 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -4.81 Total: 10.70 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.42 Total: -7.27 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.16 Total: -54.79 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.81 -7.71 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021758040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.730 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds