Wall clock time and date at job start Thu Apr 9 2020 11:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48494 * 109.47279 * 239.99656 * 3 2 1 5 5 H 1.48501 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46962 * 119.99611 * 3 2 1 7 7 C 1.38820 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99632 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85192 * 336.19119 * 10 9 7 12 12 C 1.53784 * 113.61473 * 107.50035 * 10 9 7 13 13 C 1.53785 * 87.08226 * 139.98004 * 12 10 9 14 14 H 1.08998 * 113.69285 * 89.12810 * 13 12 10 15 15 N 1.46495 * 113.61369 * 220.01939 * 13 12 10 16 16 C 1.34783 * 120.00138 * 252.49401 * 15 13 12 17 17 O 1.21280 * 119.99508 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00171 * 179.97438 * 16 15 13 19 19 C 1.53000 * 117.49604 * 180.02562 * 18 16 15 20 20 C 1.52997 * 117.49669 * 248.62535 * 18 16 15 21 21 C 1.53784 * 87.07871 * 334.56462 * 13 12 10 22 22 H 0.97003 * 119.99796 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00437 * 359.97438 * 9 7 2 24 24 H 1.08997 * 113.61830 * 25.42799 * 12 10 9 25 25 H 1.09002 * 113.61248 * 254.52451 * 12 10 9 26 26 H 0.96998 * 120.00377 * 72.49248 * 15 13 12 27 27 H 1.09002 * 115.56044 * 34.30916 * 18 16 15 28 28 H 1.08990 * 117.49990 * 359.97438 * 19 18 16 29 29 H 1.09004 * 117.49237 * 214.97804 * 19 18 16 30 30 H 1.08999 * 117.49685 * 145.02383 * 20 18 16 31 31 H 1.08997 * 117.50044 * 359.97438 * 20 18 16 32 32 H 1.08999 * 113.61159 * 139.98283 * 21 13 12 33 33 H 1.08995 * 113.61920 * 270.80246 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0658 -3.5640 -0.4031 12 6 1.9980 -4.4015 1.3458 13 6 1.8475 -5.6974 0.5315 14 1 2.7975 -6.1646 0.2722 15 7 0.8866 -6.6427 1.1053 16 6 1.3238 -7.7699 1.7009 17 8 2.5127 -8.0014 1.7623 18 6 0.3354 -8.7421 2.2917 19 6 0.8944 -10.0027 2.9545 20 6 0.3070 -8.8827 3.8149 21 6 1.2604 -4.8291 -0.5938 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 1.1194 -4.1560 1.9422 25 1 2.9258 -4.3493 1.9157 26 1 -0.0642 -6.4574 1.0565 27 1 -0.6123 -8.8305 1.7604 28 1 1.9769 -10.1290 2.9630 29 1 0.3146 -10.9208 2.8590 30 1 -0.6592 -9.0637 4.2857 31 1 1.0035 -8.2724 4.3897 32 1 1.5926 -5.1219 -1.5897 33 1 0.1799 -4.7016 -0.5285 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021758040.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:00 Heat of formation + Delta-G solvation = -6.813103 kcal Electronic energy + Delta-G solvation = -14864.855368 eV Core-core repulsion = 12312.187769 eV Total energy + Delta-G solvation = -2552.667599 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19854 -39.58361 -36.99315 -35.76375 -34.21173 -31.81414 -26.90675 -26.53607 -25.51594 -23.32460 -23.03085 -21.36032 -20.54690 -19.15575 -18.38973 -17.54719 -16.41483 -16.23282 -16.13939 -15.61415 -15.24703 -14.91100 -14.53822 -13.64676 -13.51858 -13.32329 -13.16141 -12.80064 -12.43760 -12.28096 -12.20469 -12.09050 -11.77111 -11.56269 -11.51434 -11.38627 -10.89720 -10.79675 -9.99440 -8.99693 -7.95759 -5.24047 1.48173 1.48247 1.50694 1.56644 2.18913 2.57163 2.94799 3.35770 3.65938 3.75676 3.82811 3.89015 3.96661 4.01478 4.20586 4.29053 4.30120 4.70774 4.75424 4.86682 4.88660 4.93865 5.04407 5.12769 5.14057 5.24392 5.37866 5.50497 5.67010 6.26525 6.59554 7.25821 7.33232 8.08352 8.32338 9.27161 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.063833 B = 0.004631 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.537526 B = 6044.330364 C = 6120.782258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.723 5.723 10 C 0.150 3.850 11 H 0.078 0.922 12 C -0.170 4.170 13 C 0.133 3.867 14 H 0.103 0.897 15 N -0.702 5.702 16 C 0.534 3.466 17 O -0.592 6.592 18 C -0.201 4.201 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.138 4.138 22 H 0.252 0.748 23 H 0.376 0.624 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.414 0.586 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -17.881 3.792 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.039 3.961 11 H 0.096 0.904 12 C -0.212 4.212 13 C 0.028 3.972 14 H 0.121 0.879 15 N -0.351 5.351 16 C 0.322 3.678 17 O -0.473 6.473 18 C -0.221 4.221 19 C -0.186 4.186 20 C -0.183 4.183 21 C -0.178 4.178 22 H 0.061 0.939 23 H 0.208 0.792 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.251 0.749 27 H 0.171 0.829 28 H 0.102 0.898 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.113 -17.879 3.802 18.312 hybrid contribution -0.269 1.352 -0.011 1.378 sum -1.382 -16.527 3.792 17.012 Atomic orbital electron populations 1.69793 1.06529 1.26202 1.59310 1.25533 0.96372 1.00995 1.03532 0.85243 0.77258 0.79296 0.78156 1.20333 1.22080 1.20610 1.19678 0.91576 0.85457 1.41448 0.90671 1.42481 1.05372 1.00732 1.87499 1.21665 0.95767 0.84211 0.94431 0.90369 1.24164 1.01103 0.96436 0.99488 1.22142 0.93654 0.86999 0.94440 0.87885 1.45875 1.10942 1.20660 1.57644 1.20393 0.88805 0.81751 0.76841 1.90654 1.19286 1.77178 1.60199 1.22305 1.01401 1.00026 0.98412 1.23003 1.01500 0.92709 1.01406 1.23023 1.04258 1.01506 0.89533 1.23659 1.01057 0.94852 0.98230 0.93942 0.79168 0.91019 0.93034 0.74876 0.82889 0.89772 0.85179 0.84915 0.89975 0.89936 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -13.84 9.97 84.04 0.84 -13.00 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.72 -35.93 5.40 -320.44 -1.73 -37.66 16 10 C 0.15 5.82 4.48 45.52 0.20 6.02 16 11 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 12 C -0.17 -6.00 7.68 31.12 0.24 -5.76 16 13 C 0.13 3.95 4.24 45.52 0.19 4.14 16 14 H 0.10 3.25 7.46 -2.39 -0.02 3.23 16 15 N -0.70 -17.44 5.35 -440.03 -2.36 -19.80 16 16 C 0.53 14.32 7.61 87.66 0.67 14.98 16 17 O -0.59 -21.05 15.86 -3.03 -0.05 -21.09 16 18 C -0.20 -3.57 6.19 -11.54 -0.07 -3.65 16 19 C -0.15 -2.43 10.04 30.58 0.31 -2.13 16 20 C -0.15 -2.27 10.23 30.58 0.31 -1.95 16 21 C -0.14 -4.19 7.58 31.12 0.24 -3.95 16 22 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 23 H 0.38 19.75 7.93 -92.71 -0.73 19.01 16 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.41 8.05 8.73 -92.71 -0.81 7.24 16 27 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 1.79 7.67 -2.39 -0.02 1.77 16 29 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -68.66 285.18 1.14 -67.52 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.43 Total: 30.25 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 3.39 Total: -8.91 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.80 Total: -115.68 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -68.66 1.14 -67.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021758040.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.702 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds