Wall clock time and date at job start Thu Apr 9 2020 11:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47314 * 180.02562 * 15 13 12 17 17 C 1.52997 * 117.50044 * 243.62297 * 16 15 13 18 18 C 1.52998 * 117.49907 * 174.99700 * 16 15 13 19 19 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 20 20 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 21 21 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 22 22 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 23 23 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 24 24 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 25 25 H 1.09004 * 109.46895 * 299.99896 * 15 13 12 26 26 H 1.08997 * 109.47176 * 60.00031 * 15 13 12 27 27 H 1.08999 * 115.54873 * 29.33303 * 16 15 13 28 28 H 1.08997 * 117.49647 * 359.97438 * 17 16 15 29 29 H 1.09003 * 117.50007 * 145.01770 * 17 16 15 30 30 H 1.08997 * 117.49864 * 214.97913 * 18 16 15 31 31 H 1.08995 * 117.50155 * 0.02562 * 18 16 15 32 32 H 1.08999 * 113.77157 * 90.38334 * 19 9 7 33 33 H 1.09002 * 113.84143 * 318.91597 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4599 -5.3193 2.2106 15 6 -0.5738 -4.6857 4.3040 16 6 -1.7539 -5.4983 4.8407 17 6 -2.8197 -4.7501 5.6439 18 6 -1.8471 -5.6929 6.3554 19 6 -0.1058 -2.7570 0.0001 20 1 -0.4850 0.8401 -0.0004 21 1 2.5619 -4.0327 0.6538 22 1 1.8325 -4.2346 -0.9996 23 1 -0.1594 -4.9598 0.2327 24 1 1.0580 -3.5720 2.5714 25 1 0.3591 -5.1192 4.6645 26 1 -0.6538 -3.6556 4.6511 27 1 -2.0860 -6.3201 4.2063 28 1 -2.6799 -3.6791 5.7904 29 1 -3.8534 -5.0796 5.5379 30 1 -2.2408 -6.6426 6.7175 31 1 -1.0679 -5.2417 6.9696 32 1 -0.5312 -2.8713 -0.9969 33 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030046060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:07 Heat of formation + Delta-G solvation = 38.379331 kcal Electronic energy + Delta-G solvation = -15189.100641 eV Core-core repulsion = 12638.392733 eV Total energy + Delta-G solvation = -2550.707908 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56968 -37.81602 -36.68172 -33.20658 -31.83163 -29.38646 -27.30875 -24.80756 -23.21579 -22.38485 -21.25334 -19.77092 -19.19447 -16.98106 -16.67925 -15.80121 -15.09773 -14.78593 -14.69066 -14.05201 -13.74197 -13.36242 -12.68258 -12.62426 -12.34573 -11.58009 -11.48969 -11.38303 -11.23498 -10.88259 -10.57473 -10.35572 -10.23711 -9.98795 -9.83485 -9.50271 -9.42830 -8.84342 -8.33436 -6.91195 -5.77592 -3.11444 3.06231 3.37029 3.41825 3.44151 3.58484 3.87409 4.43339 4.72907 4.89153 4.93751 5.12093 5.21224 5.47091 5.54666 5.56217 5.59646 5.67425 5.72985 5.89016 6.09039 6.13584 6.25831 6.33667 6.43971 6.53342 6.86925 7.22950 7.35682 7.60475 7.95683 8.08526 8.71487 9.02258 9.68977 10.57394 11.38689 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034651 B = 0.006201 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.868812 B = 4514.111144 C = 4931.027211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.110 3.890 11 C 0.090 3.910 12 N -0.694 5.694 13 C 0.514 3.486 14 O -0.552 6.552 15 C -0.111 4.111 16 C -0.135 4.135 17 C -0.179 4.179 18 C -0.184 4.184 19 C 0.150 3.850 20 H 0.254 0.746 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.403 0.597 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 -9.387 9.807 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.016 4.016 12 N -0.344 5.344 13 C 0.301 3.699 14 O -0.430 6.430 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.216 4.216 18 C -0.221 4.221 19 C 0.024 3.976 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.238 0.762 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.142 -9.462 9.387 13.378 hybrid contribution 0.824 1.355 -0.024 1.586 sum -0.319 -8.107 9.364 12.390 Atomic orbital electron populations 1.69834 1.05024 1.25344 1.56350 1.24787 0.95615 0.97498 1.02407 0.86148 0.78586 0.83552 0.77609 1.21621 1.21668 1.20639 1.19014 0.90213 0.82043 1.44140 0.90305 1.46161 1.02291 0.99135 1.86290 1.22919 0.94545 0.86904 0.97292 1.22832 0.98836 1.00043 0.79919 1.45550 1.29758 1.52193 1.06876 1.20449 0.81309 0.78558 0.89630 1.90643 1.36606 1.44205 1.71540 1.21213 0.99302 1.01892 0.92703 1.22043 0.97792 1.02388 0.93161 1.23028 0.95977 0.98187 1.04408 1.22988 1.02932 1.01367 0.94814 1.22738 0.88130 0.89563 0.97149 0.93626 0.93520 0.93677 0.89411 0.76239 0.88797 0.88818 0.86458 0.88778 0.88888 0.88920 0.88893 0.94787 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.23 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.35 3.70 -177.88 -0.66 -16.01 16 10 C 0.11 2.19 8.68 -2.96 -0.03 2.16 16 11 C 0.09 1.77 4.40 -70.15 -0.31 1.46 16 12 N -0.69 -12.15 5.37 -55.34 -0.30 -12.45 16 13 C 0.51 8.70 7.83 -10.99 -0.09 8.61 16 14 O -0.55 -11.17 15.18 5.56 0.08 -11.08 16 15 C -0.11 -1.40 5.98 -27.88 -0.17 -1.56 16 16 C -0.14 -1.67 5.41 -90.62 -0.49 -2.16 16 17 C -0.18 -2.00 10.18 -26.73 -0.27 -2.27 16 18 C -0.18 -1.80 10.25 -26.73 -0.27 -2.07 16 19 C 0.15 3.63 7.32 -2.85 -0.02 3.61 16 20 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.09 1.69 7.51 -51.93 -0.39 1.30 16 24 H 0.40 6.59 8.74 -40.82 -0.36 6.23 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 27 H 0.12 1.64 7.30 -51.93 -0.38 1.26 16 28 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 LS Contribution 282.54 15.07 4.26 4.26 Total: -1.00 -31.95 282.54 -7.74 -39.68 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.83 Total: 4.27 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.90 Total: 1.10 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.32 Total: -55.12 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.95 -7.74 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030046060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.064 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds