Wall clock time and date at job start Thu Apr 9 2020 11:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33081 * 119.99754 * 2 1 4 4 C 1.50707 * 119.99806 * 179.71902 * 3 2 1 5 5 C 1.46946 * 120.00030 * 359.71834 * 3 2 1 6 6 O 1.21528 * 120.00244 * 0.02562 * 5 3 2 7 7 O 1.34808 * 119.99855 * 179.97438 * 5 3 2 8 8 C 1.45201 * 117.00045 * 179.97438 * 7 5 3 9 9 H 1.09003 * 109.46810 * 330.00832 * 8 7 5 10 10 C 1.50695 * 109.47507 * 210.00434 * 8 7 5 11 11 H 1.08004 * 119.99699 * 359.97438 * 10 8 7 12 12 C 1.37868 * 120.00283 * 180.02562 * 10 8 7 13 13 N 1.31512 * 120.00174 * 180.02562 * 12 10 8 14 14 Si 1.86804 * 119.99984 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.46923 * 90.00339 * 14 12 10 16 16 H 1.48495 * 109.47302 * 210.00506 * 14 12 10 17 17 H 1.48497 * 109.47176 * 330.00375 * 14 12 10 18 18 C 1.53000 * 109.46617 * 90.00161 * 8 7 5 19 19 C 1.52997 * 117.50064 * 8.74925 * 18 8 7 20 20 C 1.53002 * 117.50362 * 300.08875 * 18 8 7 21 21 H 1.09000 * 109.47827 * 300.28055 * 1 2 3 22 22 H 1.09007 * 109.47098 * 60.28332 * 1 2 3 23 23 H 1.09004 * 109.46986 * 180.27550 * 1 2 3 24 24 H 1.08002 * 119.99761 * 179.71552 * 2 1 3 25 25 H 1.08997 * 109.46557 * 89.99724 * 4 3 2 26 26 H 1.09000 * 109.47171 * 209.99653 * 4 3 2 27 27 H 1.08993 * 109.47264 * 330.00148 * 4 3 2 28 28 H 0.97000 * 120.00232 * 179.97438 * 13 12 10 29 29 H 1.09003 * 115.55006 * 154.41894 * 18 8 7 30 30 H 1.08995 * 117.49954 * 0.02562 * 19 18 8 31 31 H 1.09008 * 117.49881 * 145.01951 * 19 18 8 32 32 H 1.08997 * 117.49901 * 214.97867 * 20 18 8 33 33 H 1.08999 * 117.49395 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 3.6794 1.1526 0.0064 5 6 1.4376 2.4251 -0.0063 6 8 0.2223 2.4251 -0.0110 7 8 2.1116 3.5926 -0.0057 8 6 1.3208 4.8103 -0.0127 9 1 0.3790 4.6289 -0.5307 10 6 2.0826 5.9000 -0.7220 11 1 3.0633 5.6977 -1.1268 12 6 1.5282 7.1555 -0.8534 13 7 2.1928 8.1063 -1.4729 14 14 -0.1677 7.5055 -0.1528 15 1 -0.0361 7.9821 1.2475 16 1 -0.8352 8.5500 -0.9704 17 1 -0.9801 6.2627 -0.1783 18 6 1.0359 5.2415 1.4274 19 6 1.7640 4.4935 2.5460 20 6 0.2678 4.2637 2.3189 21 1 -0.3635 0.5182 0.8874 22 1 -0.3634 0.5095 -0.8926 23 1 -0.3633 -1.0277 0.0049 24 1 2.0470 -0.9353 0.0046 25 1 4.0470 1.1500 -1.0197 26 1 4.0406 2.0438 0.5195 27 1 4.0406 0.2639 0.5239 28 1 1.8025 8.9895 -1.5656 29 1 0.8505 6.3059 1.5715 30 1 2.4463 3.6946 2.2560 31 1 2.0572 5.0658 3.4262 32 1 -0.4226 4.6848 3.0496 33 1 -0.0350 3.3133 1.8792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:44 Heat of formation + Delta-G solvation = -45.991741 kcal Electronic energy + Delta-G solvation = -15965.048936 eV Core-core repulsion = 13378.389673 eV Total energy + Delta-G solvation = -2586.659263 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00636 -37.17633 -35.12622 -34.64277 -32.73975 -30.10239 -28.62414 -24.90783 -23.44645 -22.35745 -21.71762 -19.94596 -18.73131 -16.76104 -16.45765 -16.07657 -15.28556 -14.62810 -14.17999 -13.85504 -13.53180 -12.98303 -12.73018 -12.63186 -12.37970 -11.94176 -11.83877 -11.65251 -11.37814 -11.27873 -10.93379 -10.74453 -10.19994 -9.92986 -9.63212 -9.55979 -9.24173 -8.95047 -8.78976 -8.66207 -6.22265 -4.24286 1.45789 3.18237 3.30880 3.37730 3.42317 3.57508 4.27776 4.55268 4.96362 5.06251 5.11915 5.32511 5.54972 5.60215 5.69871 5.74743 5.78521 5.83801 5.93954 6.08247 6.19694 6.23717 6.29327 6.49378 6.53087 6.72840 6.76025 6.80795 6.88333 7.34827 7.52535 8.24692 8.61881 8.85592 9.34954 10.89521 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.009288 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.467772 B = 3014.056913 C = 3200.237283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.161 4.161 4 C -0.110 4.110 5 C 0.486 3.514 6 O -0.515 6.515 7 O -0.333 6.333 8 C 0.225 3.775 9 H 0.051 0.949 10 C -0.518 4.518 11 H 0.088 0.912 12 C 0.080 3.920 13 N -0.888 5.888 14 Si 0.873 3.127 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.256 1.256 18 C -0.163 4.163 19 C -0.170 4.170 20 C -0.207 4.207 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.128 0.872 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.269 0.731 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.113 -13.273 5.079 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 C -0.162 4.162 4 C -0.167 4.167 5 C 0.332 3.668 6 O -0.407 6.407 7 O -0.249 6.249 8 C 0.171 3.829 9 H 0.069 0.931 10 C -0.556 4.556 11 H 0.106 0.894 12 C -0.123 4.123 13 N -0.525 5.525 14 Si 0.701 3.299 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.180 1.180 18 C -0.182 4.182 19 C -0.207 4.207 20 C -0.243 4.243 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.451 -13.007 5.005 14.012 hybrid contribution -0.907 0.519 0.451 1.138 sum -2.359 -12.487 5.456 13.830 Atomic orbital electron populations 1.21062 0.91822 1.00810 1.04295 1.23630 0.97174 0.96453 0.92639 1.20989 0.96952 0.90728 1.07573 1.20718 0.90212 1.03029 1.02742 1.21315 0.86226 0.85928 0.73286 1.90748 1.15103 1.88415 1.46467 1.86616 1.41696 1.14721 1.81833 1.20437 0.92496 0.79205 0.90747 0.93121 1.20719 1.05715 0.93098 1.36061 0.89426 1.24716 0.97416 0.95471 0.94688 1.69839 1.37877 1.03075 1.41661 0.87053 0.85013 0.79086 0.78763 1.20067 1.21519 1.18038 1.23419 1.03139 0.97545 0.94072 1.22753 0.94411 1.03629 0.99932 1.23253 0.94331 1.02722 1.04031 0.90126 0.90034 0.93094 0.85470 0.91065 0.90371 0.91850 0.92090 0.87518 0.88870 0.89718 0.90043 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 8.45 36.01 0.30 -1.30 16 2 C -0.08 -1.01 9.95 -36.10 -0.36 -1.37 16 3 C -0.16 -2.47 6.00 -102.89 -0.62 -3.09 16 4 C -0.11 -1.42 9.85 36.01 0.35 -1.07 16 5 C 0.49 9.69 6.80 34.26 0.23 9.92 16 6 O -0.51 -10.89 10.16 -19.29 -0.20 -11.09 16 7 O -0.33 -7.59 7.64 -40.79 -0.31 -7.90 16 8 C 0.23 5.69 2.01 -27.89 -0.06 5.63 16 9 H 0.05 1.36 6.22 -51.93 -0.32 1.04 16 10 C -0.52 -14.89 9.48 -34.45 -0.33 -15.21 16 11 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 12 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 13 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 14 Si 0.87 21.67 24.48 -169.99 -4.16 17.51 16 15 H -0.27 -6.55 6.72 56.52 0.38 -6.17 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 18 C -0.16 -3.77 4.45 -90.62 -0.40 -4.17 16 19 C -0.17 -3.34 9.80 -26.70 -0.26 -3.60 16 20 C -0.21 -4.11 9.85 -26.69 -0.26 -4.38 16 21 H 0.08 1.17 7.22 -51.93 -0.37 0.79 16 22 H 0.08 1.21 7.22 -51.93 -0.38 0.83 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 27 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.11 2.57 4.39 -51.93 -0.23 2.35 16 30 H 0.09 1.80 6.91 -51.93 -0.36 1.44 16 31 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.10 2.07 5.36 -51.93 -0.28 1.80 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -30.72 268.73 -5.82 -36.53 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.48 Total: 3.28 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.49 Total: -16.43 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.51 Total: -19.00 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.16 Total: 17.51 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.72 -5.82 -36.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.457 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds