Wall clock time and date at job start Thu Apr 9 2020 11:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33081 * 119.99754 * 2 1 4 4 C 1.50707 * 119.99806 * 179.71902 * 3 2 1 5 5 C 1.46946 * 120.00030 * 359.71834 * 3 2 1 6 6 O 1.21528 * 120.00244 * 0.02562 * 5 3 2 7 7 O 1.34808 * 119.99855 * 179.97438 * 5 3 2 8 8 C 1.45201 * 117.00045 * 179.97438 * 7 5 3 9 9 H 1.09003 * 109.46810 * 330.00832 * 8 7 5 10 10 C 1.50695 * 109.47507 * 210.00434 * 8 7 5 11 11 H 1.08004 * 119.99699 * 359.97438 * 10 8 7 12 12 C 1.37868 * 120.00283 * 180.02562 * 10 8 7 13 13 N 1.31512 * 120.00174 * 180.02562 * 12 10 8 14 14 Si 1.86804 * 119.99984 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.46923 * 90.00339 * 14 12 10 16 16 H 1.48495 * 109.47302 * 210.00506 * 14 12 10 17 17 H 1.48497 * 109.47176 * 330.00375 * 14 12 10 18 18 C 1.53000 * 109.46617 * 90.00161 * 8 7 5 19 19 C 1.52997 * 117.50064 * 8.74925 * 18 8 7 20 20 C 1.53002 * 117.50362 * 300.08875 * 18 8 7 21 21 H 1.09000 * 109.47827 * 300.28055 * 1 2 3 22 22 H 1.09007 * 109.47098 * 60.28332 * 1 2 3 23 23 H 1.09004 * 109.46986 * 180.27550 * 1 2 3 24 24 H 1.08002 * 119.99761 * 179.71552 * 2 1 3 25 25 H 1.08997 * 109.46557 * 89.99724 * 4 3 2 26 26 H 1.09000 * 109.47171 * 209.99653 * 4 3 2 27 27 H 1.08993 * 109.47264 * 330.00148 * 4 3 2 28 28 H 0.97000 * 120.00232 * 179.97438 * 13 12 10 29 29 H 1.09003 * 115.55006 * 154.41894 * 18 8 7 30 30 H 1.08995 * 117.49954 * 0.02562 * 19 18 8 31 31 H 1.09008 * 117.49881 * 145.01951 * 19 18 8 32 32 H 1.08997 * 117.49901 * 214.97867 * 20 18 8 33 33 H 1.08999 * 117.49395 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 3.6794 1.1526 0.0064 5 6 1.4376 2.4251 -0.0063 6 8 0.2223 2.4251 -0.0110 7 8 2.1116 3.5926 -0.0057 8 6 1.3208 4.8103 -0.0127 9 1 0.3790 4.6289 -0.5307 10 6 2.0826 5.9000 -0.7220 11 1 3.0633 5.6977 -1.1268 12 6 1.5282 7.1555 -0.8534 13 7 2.1928 8.1063 -1.4729 14 14 -0.1677 7.5055 -0.1528 15 1 -0.0361 7.9821 1.2475 16 1 -0.8352 8.5500 -0.9704 17 1 -0.9801 6.2627 -0.1783 18 6 1.0359 5.2415 1.4274 19 6 1.7640 4.4935 2.5460 20 6 0.2678 4.2637 2.3189 21 1 -0.3635 0.5182 0.8874 22 1 -0.3634 0.5095 -0.8926 23 1 -0.3633 -1.0277 0.0049 24 1 2.0470 -0.9353 0.0046 25 1 4.0470 1.1500 -1.0197 26 1 4.0406 2.0438 0.5195 27 1 4.0406 0.2639 0.5239 28 1 1.8025 8.9895 -1.5656 29 1 0.8505 6.3059 1.5715 30 1 2.4463 3.6946 2.2560 31 1 2.0572 5.0658 3.4262 32 1 -0.4226 4.6848 3.0496 33 1 -0.0350 3.3133 1.8792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:44 Heat of formation + Delta-G solvation = -64.742336 kcal Electronic energy + Delta-G solvation = -15965.862023 eV Core-core repulsion = 13378.389673 eV Total energy + Delta-G solvation = -2587.472350 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.61033 -38.77314 -36.71549 -35.95506 -34.92260 -31.31877 -30.49149 -26.14731 -25.13321 -23.98268 -23.28600 -21.67061 -20.26745 -18.80952 -18.11733 -17.80763 -16.97149 -16.07517 -15.62515 -15.23230 -15.04600 -14.84261 -14.20103 -13.88763 -13.71782 -13.50686 -13.34242 -13.23232 -12.82685 -12.71599 -12.44925 -12.39245 -12.13315 -11.89816 -11.44577 -11.18931 -10.90635 -10.74198 -10.66251 -10.04290 -8.45685 -6.53549 0.24970 1.20681 1.28631 1.40934 1.99099 2.05326 2.19267 2.81986 2.96909 3.78199 3.87532 3.92994 3.99977 4.09651 4.32525 4.41309 4.62025 4.70241 4.78218 4.81372 4.84528 4.89322 4.98814 5.06714 5.10167 5.20875 5.24468 5.35593 5.44455 5.58205 5.77736 6.16118 6.49699 6.94508 7.12322 8.70123 Molecular weight = 224.12amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.009288 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.467772 B = 3014.056913 C = 3200.237283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 C -0.196 4.196 4 C -0.104 4.104 5 C 0.475 3.525 6 O -0.535 6.535 7 O -0.348 6.348 8 C 0.233 3.767 9 H 0.028 0.972 10 C -0.533 4.533 11 H 0.045 0.955 12 C 0.032 3.968 13 N -0.930 5.930 14 Si 0.938 3.062 15 H -0.253 1.253 16 H -0.282 1.282 17 H -0.255 1.255 18 C -0.199 4.199 19 C -0.153 4.153 20 C -0.186 4.186 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.178 0.822 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.275 0.725 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -15.520 6.882 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.161 4.161 5 C 0.324 3.676 6 O -0.429 6.429 7 O -0.264 6.264 8 C 0.179 3.821 9 H 0.046 0.954 10 C -0.570 4.570 11 H 0.063 0.937 12 C -0.168 4.168 13 N -0.568 5.568 14 Si 0.762 3.238 15 H -0.178 1.178 16 H -0.208 1.208 17 H -0.179 1.179 18 C -0.217 4.217 19 C -0.190 4.190 20 C -0.223 4.223 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.195 0.805 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.312 -15.274 6.815 16.884 hybrid contribution -0.612 1.068 -0.181 1.244 sum -2.924 -14.206 6.634 15.949 Atomic orbital electron populations 1.21103 0.92399 1.02637 1.02398 1.24135 0.96937 0.97182 0.87516 1.21091 0.98076 0.88995 1.11552 1.20705 0.88596 1.03738 1.03031 1.22279 0.86520 0.86306 0.72494 1.90729 1.15962 1.88547 1.47624 1.86601 1.41965 1.15174 1.82678 1.19960 0.90822 0.79408 0.91951 0.95410 1.20901 1.04464 0.94904 1.36773 0.93656 1.25524 1.01457 0.95028 0.94784 1.69962 1.40004 1.03787 1.43071 0.86011 0.79813 0.78900 0.79080 1.17845 1.20804 1.17949 1.23156 1.07402 0.97683 0.93471 1.22874 0.94441 1.02711 0.98956 1.23280 0.95052 1.01170 1.02751 0.91699 0.92266 0.89354 0.80510 0.91075 0.92700 0.88062 0.91590 0.88485 0.88962 0.87073 0.87299 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.45 71.24 0.60 -2.41 16 2 C -0.04 -0.85 9.95 24.53 0.24 -0.60 16 3 C -0.20 -5.67 6.00 -18.74 -0.11 -5.78 16 4 C -0.10 -2.50 9.85 71.24 0.70 -1.80 16 5 C 0.48 19.07 6.80 70.10 0.48 19.54 16 6 O -0.54 -22.84 10.16 19.74 0.20 -22.64 16 7 O -0.35 -16.38 7.64 -57.20 -0.44 -16.82 16 8 C 0.23 12.13 2.01 29.85 0.06 12.19 16 9 H 0.03 1.56 6.22 -2.39 -0.01 1.54 16 10 C -0.53 -32.13 9.48 25.60 0.24 -31.88 16 11 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 12 C 0.03 1.88 5.44 84.65 0.46 2.34 16 13 N -0.93 -57.87 13.96 21.44 0.30 -57.57 16 14 Si 0.94 45.41 24.48 68.60 1.68 47.09 16 15 H -0.25 -11.36 6.72 99.48 0.67 -10.69 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 18 C -0.20 -9.06 4.45 -10.79 -0.05 -9.11 16 19 C -0.15 -5.74 9.80 30.62 0.30 -5.44 16 20 C -0.19 -7.01 9.85 30.62 0.30 -6.71 16 21 H 0.06 1.77 7.22 -2.39 -0.02 1.75 16 22 H 0.06 1.69 7.22 -2.38 -0.02 1.67 16 23 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.56 7.68 -2.39 -0.02 1.54 16 27 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.10 4.59 4.39 -2.39 -0.01 4.57 16 30 H 0.09 3.47 6.91 -2.39 -0.02 3.45 16 31 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 32 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.09 3.73 5.36 -2.39 -0.01 3.72 16 Total: -1.00 -70.38 268.73 5.97 -64.40 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.00 Total: 15.21 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.23 Total: -29.67 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.30 Total: -57.57 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.24 Total: -39.45 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.68 Total: 47.09 kcal Total: -70.38 5.97 -64.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.339 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds