Wall clock time and date at job start Thu Apr 9 2020 11:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00202 * 2 1 4 4 H 1.48497 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46905 * 300.00102 * 3 2 1 6 6 H 1.48493 * 109.46961 * 60.00218 * 3 2 1 7 7 C 1.38810 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00166 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47230 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47447 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00115 * 179.97438 * 12 11 10 14 14 O 1.21606 * 119.99834 * 0.02562 * 13 12 11 15 15 C 1.47425 * 119.99850 * 180.02562 * 13 12 11 16 16 C 1.41288 * 126.41671 * 0.04693 * 15 13 12 17 17 N 1.30449 * 108.02633 * 179.70252 * 16 15 13 18 18 N 1.39939 * 108.89553 * 0.40857 * 17 16 15 19 19 H 0.97001 * 125.75870 * 179.85304 * 18 17 16 20 20 C 1.34266 * 108.48792 * 359.57838 * 18 17 16 21 21 H 0.97001 * 119.99800 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99378 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47874 * 60.00000 * 10 9 7 24 24 H 1.09007 * 109.47025 * 299.99750 * 10 9 7 25 25 H 1.09003 * 109.47033 * 60.00068 * 11 10 9 26 26 H 1.08998 * 109.46795 * 299.99933 * 11 10 9 27 27 H 0.97000 * 119.99689 * 0.02562 * 12 11 10 28 28 H 1.08001 * 125.98863 * 359.97438 * 16 15 13 29 29 H 1.08001 * 126.29046 * 180.22045 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 7 1.7960 -6.0885 -0.0018 13 6 1.1220 -7.2556 -0.0019 14 8 -0.0940 -7.2555 -0.0020 15 6 1.8591 -8.5324 -0.0020 16 6 3.2632 -8.6903 -0.0010 17 7 3.5257 -9.9681 0.0051 18 7 2.3200 -10.6785 -0.0013 19 1 2.2312 -11.6444 -0.0008 20 6 1.3068 -9.7975 -0.0020 21 1 -0.4850 0.8401 -0.0004 22 1 0.3554 -2.3880 -0.0005 23 1 2.6846 -3.7147 0.8894 24 1 2.6845 -3.7146 -0.8906 25 1 0.4373 -4.7618 -0.8914 26 1 0.4366 -4.7621 0.8886 27 1 2.7660 -6.0885 -0.0014 28 1 3.9915 -7.8929 -0.0004 29 1 0.2532 -10.0350 -0.0030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124067872.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:52 Heat of formation + Delta-G solvation = 17.517461 kcal Electronic energy + Delta-G solvation = -14249.482314 eV Core-core repulsion = 11594.329424 eV Total energy + Delta-G solvation = -2655.152890 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.29653 -40.17199 -37.24102 -35.44851 -33.31528 -32.60791 -31.37544 -29.24250 -25.80773 -23.89600 -23.03790 -22.72605 -20.97714 -19.62733 -19.23697 -17.12214 -16.89127 -16.64542 -16.42873 -15.73892 -15.50986 -15.26180 -15.01174 -14.79209 -14.42208 -13.79446 -13.06213 -13.01850 -12.66288 -12.46087 -12.22392 -12.01640 -11.82314 -10.97863 -10.96856 -10.83686 -10.19459 -9.74802 -9.03541 -7.94641 -5.25676 0.56211 1.16054 1.50466 1.51847 1.61965 1.78759 2.27937 2.47572 2.61337 3.39804 3.65839 3.94264 4.06461 4.11443 4.21902 4.28537 4.41966 4.62815 4.76905 5.10226 5.18869 5.33786 5.45600 5.53238 6.23473 6.26596 6.47111 6.67368 7.31410 7.32753 8.05253 8.27868 9.29293 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.075487 B = 0.004217 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.835064 B = 6638.196503 C = 6988.584213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.148 3.852 11 C 0.130 3.870 12 N -0.708 5.708 13 C 0.591 3.409 14 O -0.596 6.596 15 C -0.319 4.319 16 C 0.091 3.909 17 N -0.320 5.320 18 N -0.449 5.449 19 H 0.461 0.539 20 C 0.148 3.852 21 H 0.252 0.748 22 H 0.374 0.626 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.415 0.585 28 H 0.215 0.785 29 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -21.454 -0.008 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.391 5.391 10 C 0.021 3.979 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.380 3.620 14 O -0.478 6.478 15 C -0.334 4.334 16 C -0.098 4.098 17 N -0.141 5.141 18 N -0.156 5.156 19 H 0.309 0.691 20 C -0.007 4.007 21 H 0.060 0.940 22 H 0.206 0.794 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.252 0.748 28 H 0.232 0.768 29 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 7.318 -22.239 -0.003 23.412 hybrid contribution -0.619 1.276 -0.001 1.419 sum 6.698 -20.963 -0.004 22.007 Atomic orbital electron populations 1.69846 1.06819 1.26152 1.59352 1.25682 0.96466 1.01492 1.03541 0.84986 0.78333 0.79327 0.76554 1.18573 1.22124 1.22116 1.19699 0.91763 0.84834 1.41329 0.89815 1.42449 1.05804 1.01147 1.89727 1.20862 0.93621 0.84013 0.99359 1.21136 0.94758 0.82446 1.01161 1.45468 1.11016 1.04450 1.74999 1.17630 0.86165 0.83484 0.74733 1.90758 1.15382 1.88293 1.53406 1.20220 0.94187 0.93117 1.25846 1.24516 0.94779 0.94895 0.95561 1.77137 1.05417 1.05904 1.25685 1.46255 1.03001 1.10414 1.55910 0.69119 1.23407 0.96392 0.88429 0.92461 0.93961 0.79447 0.94333 0.94340 0.92801 0.92799 0.74789 0.76816 0.76991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 15 2 C -0.08 -4.58 5.50 84.86 0.47 -4.12 15 3 Si 0.98 45.83 29.55 68.60 2.03 47.86 15 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 7 C -0.24 -13.52 9.99 84.03 0.84 -12.69 15 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 15 9 N -0.75 -38.08 5.60 -343.45 -1.92 -40.00 15 10 C 0.15 5.62 6.37 86.38 0.55 6.17 15 11 C 0.13 4.46 5.79 86.38 0.50 4.96 15 12 N -0.71 -18.80 5.55 -466.37 -2.59 -21.39 15 13 C 0.59 16.89 7.81 86.66 0.68 17.56 15 14 O -0.60 -22.02 16.90 -4.05 -0.07 -22.09 15 15 C -0.32 -6.69 6.13 -20.15 -0.12 -6.81 15 16 C 0.09 1.56 11.50 85.65 0.99 2.55 15 17 N -0.32 -5.74 12.63 -56.27 -0.71 -6.45 15 18 N -0.45 -5.61 7.29 -56.31 -0.41 -6.02 15 19 H 0.46 2.22 8.96 -213.42 -1.91 0.31 15 20 C 0.15 2.28 11.82 84.27 1.00 3.28 15 21 H 0.25 15.03 8.31 -92.71 -0.77 14.26 15 22 H 0.37 20.59 7.67 -92.71 -0.71 19.88 15 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.04 1.38 8.14 -2.38 -0.02 1.37 15 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 27 H 0.42 8.06 7.43 -92.71 -0.69 7.37 15 28 H 0.22 2.33 7.50 -2.91 -0.02 2.31 15 29 H 0.21 2.26 8.06 -2.91 -0.02 2.24 15 Total: -1.00 -75.71 265.15 -0.61 -76.32 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -2.11 Total: 20.68 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.89 Total: 10.91 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -5.35 Total: -133.67 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.07 Total: -22.09 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.71 -0.61 -76.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124067872.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.837 kcal (2) G-P(sol) polarization free energy of solvation -75.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds