Wall clock time and date at job start Thu Apr 9 2020 11:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48498 * 109.47150 * 239.99589 * 3 2 1 5 5 H 1.48506 * 109.46989 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47276 * 119.99379 * 3 2 1 7 7 C 1.38815 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00309 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47238 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21617 * 120.00330 * 0.02562 * 13 12 11 15 15 C 1.47106 * 120.00040 * 180.02562 * 13 12 11 16 16 C 1.32986 * 120.00138 * 180.02562 * 15 13 12 17 17 C 1.51407 * 136.31548 * 359.62331 * 16 15 13 18 18 C 1.53385 * 87.51751 * 206.06276 * 17 16 15 19 19 C 1.51413 * 136.31796 * 180.02562 * 16 15 13 20 20 H 0.97000 * 119.99521 * 0.02562 * 1 2 3 21 21 H 0.97005 * 119.99881 * 359.97438 * 9 7 2 22 22 H 1.09000 * 109.47435 * 59.99973 * 10 9 7 23 23 H 1.09002 * 109.46784 * 299.99609 * 10 9 7 24 24 H 1.09001 * 109.47671 * 59.99927 * 11 10 9 25 25 H 1.08998 * 109.47454 * 299.99925 * 11 10 9 26 26 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 27 27 H 1.07998 * 119.99541 * 0.02562 * 15 13 12 28 28 H 1.08993 * 113.56307 * 320.64490 * 17 16 15 29 29 H 1.08998 * 113.55925 * 91.38375 * 17 16 15 30 30 H 1.09004 * 113.96422 * 220.29494 * 18 17 16 31 31 H 1.08996 * 113.59956 * 88.79878 * 18 17 16 32 32 H 1.09001 * 113.55355 * 268.61999 * 19 16 15 33 33 H 1.08995 * 113.55880 * 39.35111 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0008 12 7 1.7961 -6.0885 0.0013 13 6 1.1222 -7.2556 0.0064 14 8 -0.0940 -7.2556 0.0100 15 6 1.8577 -8.5296 0.0074 16 6 1.1927 -9.6813 0.0119 17 6 -0.2604 -10.1066 0.0236 18 6 0.1956 -11.4097 0.6919 19 6 1.5508 -11.1525 0.0149 20 1 -0.4849 0.8401 -0.0004 21 1 0.3555 -2.3881 0.0005 22 1 2.6839 -3.7142 0.8921 23 1 2.6852 -3.7150 -0.8879 24 1 0.4380 -4.7622 -0.8899 25 1 0.4360 -4.7618 0.8900 26 1 2.7662 -6.0885 0.0025 27 1 2.9376 -8.5296 0.0046 28 1 -0.8902 -9.4881 0.6630 29 1 -0.6801 -10.2512 -0.9719 30 1 -0.3181 -12.2985 0.3255 31 1 0.2294 -11.3535 1.7799 32 1 1.6281 -11.5840 -0.9830 33 1 2.4059 -11.3914 0.6472 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125561873.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:05 Heat of formation + Delta-G solvation = 10.476691 kcal Electronic energy + Delta-G solvation = -14382.389980 eV Core-core repulsion = 11830.472123 eV Total energy + Delta-G solvation = -2551.917857 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.74351 -38.37820 -35.59368 -33.75825 -31.50302 -30.69626 -27.63266 -25.96944 -24.10097 -22.92563 -21.44533 -20.59685 -18.33510 -17.20396 -16.86612 -15.82600 -15.66625 -15.13229 -14.72273 -14.32763 -13.83114 -13.62445 -13.13522 -12.87328 -12.67384 -12.16185 -11.91351 -11.40332 -11.20841 -11.08094 -10.80514 -10.78417 -10.68619 -10.13542 -9.80271 -9.56043 -9.34303 -8.93983 -8.72170 -6.97927 -5.78112 -3.08799 1.31434 3.32275 3.43138 3.43810 3.48121 3.49560 4.22785 4.30599 4.54574 4.60385 4.87746 5.08400 5.29534 5.39953 5.46204 5.51899 5.55706 5.57953 5.81706 5.83846 5.99828 5.99985 6.08741 6.19961 6.47745 6.55006 6.73802 6.81159 7.66616 7.74128 8.39300 8.44281 9.50688 10.05861 10.40719 11.44506 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.100488 B = 0.003750 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.574598 B = 7464.893557 C = 7689.408263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.720 5.720 13 C 0.545 3.455 14 O -0.545 6.545 15 C -0.194 4.194 16 C -0.068 4.068 17 C -0.106 4.106 18 C -0.143 4.143 19 C -0.108 4.108 20 H 0.257 0.743 21 H 0.386 0.614 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.400 0.600 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -21.758 0.147 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.012 4.012 12 N -0.371 5.371 13 C 0.333 3.667 14 O -0.424 6.424 15 C -0.215 4.215 16 C -0.070 4.070 17 C -0.143 4.143 18 C -0.180 4.180 19 C -0.145 4.145 20 H 0.067 0.933 21 H 0.220 0.780 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.233 0.767 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.793 -21.590 0.149 21.921 hybrid contribution 0.781 1.039 0.015 1.300 sum 4.574 -20.551 0.164 21.055 Atomic orbital electron populations 1.69661 1.05161 1.25954 1.57159 1.24782 0.95565 0.97817 1.02677 0.86216 0.78487 0.83287 0.77858 1.21192 1.21606 1.21188 1.19158 0.91018 0.83897 1.43509 0.91078 1.42189 1.06014 0.99584 1.89703 1.20758 0.93518 0.85701 0.98387 1.21557 0.95426 0.81734 1.02495 1.45829 1.10364 1.05939 1.74954 1.18405 0.87441 0.84023 0.76797 1.90775 1.13669 1.87839 1.50121 1.21640 0.99671 0.90850 1.09366 1.23432 0.98320 0.94014 0.91207 1.22212 0.94263 0.95848 1.01957 1.22731 0.96620 0.98283 1.00404 1.22337 0.98583 0.91765 1.01786 0.93309 0.78001 0.95811 0.95798 0.91335 0.91347 0.76657 0.85040 0.89447 0.88499 0.90489 0.89768 0.88227 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.93 5.60 -59.91 -0.34 -19.27 16 10 C 0.14 2.91 6.37 -4.04 -0.03 2.88 16 11 C 0.11 2.00 5.79 -4.04 -0.02 1.98 16 12 N -0.72 -10.45 5.55 -61.49 -0.34 -10.79 16 13 C 0.55 8.34 7.76 -12.66 -0.10 8.25 16 14 O -0.54 -10.36 15.15 5.26 0.08 -10.28 16 15 C -0.19 -2.23 10.03 -37.81 -0.38 -2.61 16 16 C -0.07 -0.72 6.93 -100.48 -0.70 -1.42 16 17 C -0.11 -1.11 6.99 -27.55 -0.19 -1.31 16 18 C -0.14 -1.09 8.17 -26.20 -0.21 -1.30 16 19 C -0.11 -0.79 7.95 -27.41 -0.22 -1.01 16 20 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 21 H 0.39 10.59 7.67 -40.82 -0.31 10.28 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.40 4.55 8.46 -40.82 -0.35 4.20 16 27 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.09 1.11 7.49 -51.93 -0.39 0.72 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -33.22 286.81 -7.49 -40.71 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.82 Total: 7.80 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.09 Total: -2.08 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.05 Total: -57.93 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.22 -7.49 -40.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125561873.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.188 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds