Wall clock time and date at job start Thu Apr 9 2020 11:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99794 * 2 1 4 4 H 1.48503 * 109.47146 * 269.99777 * 3 2 1 5 5 H 1.48499 * 109.47358 * 30.00061 * 3 2 1 6 6 H 1.48501 * 109.47098 * 149.99837 * 3 2 1 7 7 C 1.38815 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00195 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99764 * 180.02562 * 7 2 1 10 10 C 1.46494 * 119.99995 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47342 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46973 * 180.02562 * 11 10 9 13 13 C 1.34787 * 119.99791 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99739 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00026 * 179.97438 * 13 12 11 16 16 H 1.08996 * 115.56432 * 325.69556 * 15 13 12 17 17 C 1.53004 * 117.49684 * 111.38577 * 15 13 12 18 18 C 1.52989 * 59.99817 * 107.49073 * 17 15 13 19 19 C 1.52993 * 138.58986 * 130.89726 * 18 17 15 20 20 C 1.53002 * 60.03097 * 130.87830 * 19 18 17 21 21 H 0.96998 * 120.00166 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99942 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47002 * 59.99782 * 10 9 7 24 24 H 1.09005 * 109.47093 * 300.00543 * 10 9 7 25 25 H 1.08997 * 109.46845 * 60.00155 * 11 10 9 26 26 H 1.09002 * 109.47147 * 300.00045 * 11 10 9 27 27 H 0.96995 * 120.00608 * 0.02562 * 12 11 10 28 28 H 1.08998 * 117.50021 * 359.97438 * 17 15 13 29 29 H 1.09005 * 117.51427 * 214.97253 * 17 15 13 30 30 H 1.09002 * 117.49972 * 238.37931 * 19 18 17 31 31 H 1.09002 * 117.49720 * 23.37816 * 19 18 17 32 32 H 1.09000 * 117.49996 * 107.50719 * 20 19 18 33 33 H 1.09007 * 117.49696 * 252.52389 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 7 6.3489 -3.4600 0.0025 13 6 7.6967 -3.4600 0.0018 14 8 8.3031 -2.4096 0.0013 15 6 8.4502 -4.7650 0.0030 16 1 7.9823 -5.5778 0.5582 17 6 9.2314 -5.1308 -1.2608 18 6 9.9787 -4.6983 0.0022 19 6 11.1485 -5.1773 0.8640 20 6 11.0855 -3.7198 0.4029 21 1 -0.4850 0.8400 -0.0004 22 1 3.8647 -0.3620 0.0007 23 1 3.8492 -3.0430 -0.8875 24 1 3.8485 -3.0418 0.8925 25 1 5.8797 -1.6189 0.8914 26 1 5.8798 -1.6204 -0.8885 27 1 5.8639 -4.3000 0.0025 28 1 9.2000 -4.4277 -2.0930 29 1 9.2776 -6.1842 -1.5370 30 1 10.9483 -5.3815 1.9159 31 1 11.8897 -5.8227 0.3926 32 1 10.8438 -2.9651 1.1513 33 1 11.7850 -3.4064 -0.3722 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134305170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:57:15 Heat of formation + Delta-G solvation = 35.060931 kcal Electronic energy + Delta-G solvation = -14558.026469 eV Core-core repulsion = 12007.174664 eV Total energy + Delta-G solvation = -2550.851805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99110 -37.71421 -35.76699 -33.91374 -32.81828 -31.39489 -28.35902 -24.62942 -22.80548 -22.59138 -21.48741 -20.52731 -19.25246 -17.75707 -17.04116 -15.85144 -15.47194 -15.19322 -14.91608 -14.47811 -13.99545 -13.78304 -13.68456 -12.70172 -12.59222 -11.97404 -11.69781 -11.53885 -11.51217 -10.97172 -10.85844 -10.43427 -10.32776 -10.21473 -10.17002 -9.73941 -9.62346 -9.03244 -8.88483 -7.31529 -5.81161 -3.18617 2.48056 3.01851 3.37665 3.41466 3.45107 3.51974 3.65504 4.07312 4.55318 4.56677 4.61501 4.91948 5.20835 5.29507 5.37886 5.39190 5.43008 5.43790 5.45355 5.61235 5.64978 5.72953 5.73809 5.96214 5.97470 6.39263 6.58027 6.62998 7.57398 7.92397 8.28731 8.37024 9.14633 9.86972 10.05353 11.36717 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.063548 B = 0.004403 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.505897 B = 6358.133818 C = 6648.188157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.149 3.851 11 C 0.108 3.892 12 N -0.720 5.720 13 C 0.537 3.463 14 O -0.537 6.537 15 C -0.140 4.140 16 H 0.124 0.876 17 C -0.100 4.100 18 C -0.202 4.202 19 C -0.131 4.131 20 C -0.114 4.114 21 H 0.261 0.739 22 H 0.363 0.637 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.402 0.598 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.368 -12.136 -0.175 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.016 4.016 12 N -0.371 5.371 13 C 0.323 3.677 14 O -0.414 6.414 15 C -0.162 4.162 16 H 0.142 0.858 17 C -0.138 4.138 18 C -0.203 4.203 19 C -0.167 4.167 20 C -0.151 4.151 21 H 0.071 0.929 22 H 0.196 0.804 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.236 0.764 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.535 -11.431 -0.169 23.503 hybrid contribution 0.078 0.784 0.054 0.789 sum 20.613 -10.647 -0.116 23.200 Atomic orbital electron populations 1.69701 1.05115 1.26010 1.57110 1.24674 0.95267 0.97327 1.01645 0.86541 0.79281 0.84758 0.77950 1.20889 1.21552 1.20192 1.19014 0.80225 0.94889 1.43752 0.89077 1.42539 1.04160 1.01869 1.91355 1.20731 0.87652 0.90234 0.99303 1.21592 0.92462 0.85174 1.02366 1.45841 1.06012 1.10173 1.75100 1.19656 0.82075 0.89819 0.76157 1.90695 1.68265 1.33096 1.49330 1.21976 0.92105 0.97625 1.04446 0.85778 1.22660 0.98788 1.02107 0.90199 1.21152 0.88907 1.08450 1.01745 1.22763 0.97091 0.97977 0.98894 1.22608 0.97571 0.92383 1.02490 0.92921 0.80389 0.94865 0.94936 0.91423 0.91413 0.76417 0.88041 0.87573 0.88553 0.88391 0.88169 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.31 27.74 -169.99 -4.71 17.60 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 7 C -0.25 -7.09 10.47 -15.06 -0.16 -7.25 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -18.08 5.41 -59.91 -0.32 -18.40 16 10 C 0.15 2.79 6.37 -4.05 -0.03 2.77 16 11 C 0.11 1.77 5.79 -4.04 -0.02 1.75 16 12 N -0.72 -9.57 5.56 -60.30 -0.33 -9.90 16 13 C 0.54 7.60 7.61 -10.98 -0.08 7.52 16 14 O -0.54 -9.70 16.25 5.56 0.09 -9.61 16 15 C -0.14 -1.47 6.19 -91.77 -0.57 -2.03 16 16 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.10 -0.91 10.23 -26.73 -0.27 -1.18 16 18 C -0.20 -2.08 5.06 -154.49 -0.78 -2.86 16 19 C -0.13 -1.06 10.53 -26.73 -0.28 -1.34 16 20 C -0.11 -1.16 10.17 -26.69 -0.27 -1.43 16 21 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 22 H 0.36 8.59 5.53 -40.82 -0.23 8.36 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -33.82 287.50 -7.55 -41.37 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.81 Total: 7.09 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.56 Total: -3.95 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.12 Total: -56.84 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.82 -7.55 -41.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134305170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.436 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds