Wall clock time and date at job start Thu Apr 9 2020 11:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.53002 * 109.47438 * 169.99775 * 14 12 2 16 16 N 1.46488 * 109.47452 * 180.02562 * 15 14 12 17 17 C 1.34433 * 126.82873 * 125.00126 * 16 15 14 18 18 N 1.30824 * 108.08366 * 179.97438 * 17 16 15 19 19 C 1.33247 * 109.83125 * 0.02562 * 18 17 16 20 20 N 1.30719 * 108.94295 * 359.75117 * 19 18 17 21 21 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 22 22 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 23 23 H 1.09003 * 109.47235 * 306.75987 * 1 2 3 24 24 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 26 26 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 27 27 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 28 28 H 1.08998 * 109.47296 * 290.00509 * 14 12 2 29 29 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 30 30 H 1.08999 * 109.46954 * 300.00604 * 15 14 12 31 31 H 1.09004 * 109.46745 * 60.00053 * 15 14 12 32 32 H 1.08005 * 125.95089 * 0.02562 * 17 16 15 33 33 H 1.07992 * 125.52811 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 7 1.3925 -0.2401 4.8524 17 6 0.5562 -0.7469 5.7748 18 7 0.3847 0.1552 6.7067 19 6 1.0917 1.2463 6.4151 20 7 1.7299 1.0507 5.2912 21 1 -0.3633 -1.0205 0.1212 22 1 -0.3634 0.4053 -0.9442 23 1 -0.3634 0.6150 0.8233 24 1 2.9524 -0.1049 -4.2507 25 1 3.9187 0.2052 1.1591 26 1 3.8209 -1.3116 2.0859 27 1 3.8029 -1.3530 0.3067 28 1 2.0519 0.9347 2.5279 29 1 0.4722 0.1324 2.3564 30 1 1.3595 -1.8651 3.5272 31 1 2.9392 -1.0630 3.6989 32 1 0.1052 -1.7280 5.7511 33 1 1.1338 2.1450 7.0125 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388989708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:48 Heat of formation + Delta-G solvation = 99.271335 kcal Electronic energy + Delta-G solvation = -15360.441682 eV Core-core repulsion = 12844.667001 eV Total energy + Delta-G solvation = -2515.774681 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02352 -37.61493 -34.34165 -32.51390 -31.20676 -30.38819 -28.62133 -25.76229 -24.56135 -22.80804 -21.97530 -20.98725 -19.33449 -17.28195 -17.10140 -15.87635 -15.36062 -14.77583 -14.39817 -14.14703 -13.92389 -13.48093 -13.20891 -12.54241 -12.49182 -12.25333 -11.54346 -11.35905 -11.08927 -10.88440 -10.76661 -10.52082 -10.30052 -10.02948 -9.84800 -9.79930 -9.54840 -9.16461 -8.65896 -7.51703 -6.16677 -4.16088 1.64698 2.33435 2.94864 3.20583 3.30017 3.31890 4.28861 4.32719 4.40531 4.79071 4.93609 5.05656 5.20089 5.33292 5.41267 5.85071 5.96196 6.08596 6.22063 6.22834 6.34402 6.42080 6.49066 6.55941 6.76918 6.80581 6.91021 7.19101 7.51153 7.82260 7.95546 8.06434 8.54336 8.92727 9.46489 10.96016 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048987 B = 0.006152 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.445786 B = 4549.988569 C = 4686.819342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H 0.002 0.998 4 C -0.503 4.503 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.038 3.962 15 C 0.129 3.871 16 N -0.369 5.369 17 C 0.251 3.749 18 N -0.554 5.554 19 C 0.189 3.811 20 N -0.317 5.317 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.019 0.981 24 H 0.265 0.735 25 H 0.013 0.987 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.218 0.782 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 0.418 14.778 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 H 0.020 0.980 4 C -0.542 4.542 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.192 1.192 12 N -0.255 5.255 13 C -0.114 4.114 14 C -0.092 4.092 15 C 0.007 3.993 16 N -0.160 5.160 17 C -0.045 4.045 18 N -0.282 5.282 19 C -0.114 4.114 20 N -0.146 5.146 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.234 0.766 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.257 0.414 14.424 14.606 hybrid contribution 0.297 1.678 -0.229 1.720 sum -1.960 2.092 14.195 14.482 Atomic orbital electron populations 1.21998 0.97855 1.00380 0.98983 1.19742 0.92231 0.92241 0.88352 0.98013 1.20844 1.43457 0.95908 0.93976 0.89972 1.24977 0.94536 0.97920 0.95433 1.69877 1.45690 1.35740 1.01952 0.86967 0.79085 0.86856 0.77289 1.20294 1.21280 1.19159 1.62187 1.10289 1.52002 1.00992 1.22266 0.87724 0.99560 1.01804 1.22329 1.01630 0.95290 0.89931 1.22024 1.01355 0.95788 0.80087 1.50665 1.34544 1.11306 1.19510 1.26060 0.92324 1.00274 0.85884 1.70511 1.27151 1.01950 1.28613 1.25965 0.93671 0.98346 0.93393 1.78071 1.24644 0.96641 1.15197 0.92666 0.93010 0.96161 0.92495 0.96821 0.93674 0.89345 0.94434 0.90422 0.87206 0.89228 0.76563 0.76989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.76 37.15 0.33 -2.47 16 2 C 0.18 4.13 1.70 -68.87 -0.12 4.01 16 3 H 0.00 0.05 5.35 -51.93 -0.28 -0.22 16 4 C -0.50 -13.45 7.46 -34.44 -0.26 -13.70 16 5 H 0.08 2.41 8.04 -52.49 -0.42 1.99 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 8 Si 0.87 21.18 26.95 -169.99 -4.58 16.60 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.30 6.88 56.52 0.39 -5.91 16 12 N -0.53 -10.27 4.62 -236.28 -1.09 -11.36 16 13 C 0.03 0.64 9.06 60.07 0.54 1.19 16 14 C 0.04 0.62 4.99 -3.82 -0.02 0.60 16 15 C 0.13 1.64 6.48 -4.05 -0.03 1.62 16 16 N -0.37 -4.87 3.69 -62.64 -0.23 -5.10 16 17 C 0.25 2.84 12.63 -90.66 -1.14 1.69 16 18 N -0.55 -7.25 11.19 -15.83 -0.18 -7.42 16 19 C 0.19 2.41 13.03 -91.80 -1.20 1.21 16 20 N -0.32 -4.70 12.57 29.29 0.37 -4.33 16 21 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.05 1.12 8.13 -51.93 -0.42 0.69 16 23 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.68 6.30 -51.93 -0.33 0.35 16 27 H 0.09 1.84 6.96 -51.93 -0.36 1.48 16 28 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 30 H 0.11 1.15 8.09 -51.93 -0.42 0.73 16 31 H 0.09 1.12 6.47 -51.93 -0.34 0.78 16 32 H 0.22 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.21 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 274.37 15.07 4.13 4.13 Total: -1.00 -31.36 274.37 -7.27 -38.63 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -4.48 Total: -1.61 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.99 Total: -3.90 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.36 Total: -53.86 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.58 Total: 16.60 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.36 -7.27 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388989708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.902 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds