Wall clock time and date at job start Thu Apr 9 2020 11:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.46790 * 2 1 4 4 N 1.28720 * 125.87237 * 269.97368 * 3 2 1 5 5 N 1.28627 * 110.18188 * 180.02562 * 4 3 2 6 6 C 1.33776 * 108.88792 * 359.77249 * 5 4 3 7 7 C 1.35312 * 125.86974 * 90.00186 * 3 2 1 8 8 C 1.50699 * 126.90943 * 359.94115 * 7 3 2 9 9 N 1.46906 * 109.47140 * 274.99969 * 8 7 3 10 10 C 1.46898 * 110.99888 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47465 * 35.00194 * 10 9 8 12 12 C 1.53000 * 109.47140 * 275.00023 * 10 9 8 13 13 C 1.50696 * 109.47011 * 155.00289 * 10 9 8 14 14 H 1.08002 * 119.99970 * 359.97438 * 13 10 9 15 15 C 1.37884 * 120.00241 * 179.97438 * 13 10 9 16 16 N 1.31509 * 119.99792 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00255 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47255 * 89.99807 * 17 15 13 19 19 H 1.48492 * 109.47261 * 210.00298 * 17 15 13 20 20 H 1.48504 * 109.47205 * 330.00166 * 17 15 13 21 21 H 1.09007 * 109.47399 * 60.00042 * 1 2 3 22 22 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47676 * 299.99866 * 1 2 3 24 24 H 1.09000 * 109.47448 * 240.00552 * 2 1 3 25 25 H 1.08997 * 109.47446 * 120.00047 * 2 1 3 26 26 H 1.07993 * 126.75492 * 180.23779 * 6 5 4 27 27 H 1.09004 * 109.47103 * 155.00070 * 8 7 3 28 28 H 1.09000 * 109.47247 * 34.99947 * 8 7 3 29 29 H 1.00904 * 110.99860 * 56.04901 * 9 8 7 30 30 H 1.09006 * 109.47131 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47000 * 299.99967 * 12 10 9 32 32 H 1.08994 * 109.47134 * 60.00288 * 12 10 9 33 33 H 0.97000 * 120.00111 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.2700 2.0922 -1.0430 5 7 2.6831 3.2597 -0.6952 6 6 2.7030 3.3318 0.6405 7 6 2.2824 2.1288 1.0965 8 6 2.1326 1.7085 2.5359 9 7 0.7450 1.9242 2.9672 10 6 0.5610 1.5241 4.3686 11 1 1.4656 1.7505 4.9329 12 6 0.2796 0.0218 4.4373 13 6 -0.6014 2.2803 4.9584 14 1 -1.1485 2.9878 4.3528 15 6 -0.9666 2.0691 6.2711 16 7 -0.3001 1.2081 7.0086 17 14 -2.4070 3.0070 7.0024 18 1 -3.6585 2.2364 6.7903 19 1 -2.1848 3.1993 8.4580 20 1 -2.5230 4.3312 6.3403 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 2.9985 4.1818 1.2374 27 1 2.8029 2.3007 3.1590 28 1 2.3836 0.6524 2.6341 29 1 0.0991 1.4366 2.3645 30 1 0.1426 -0.2750 5.4772 31 1 -0.6251 -0.2046 3.8730 32 1 1.1203 -0.5252 4.0107 33 1 -0.5567 1.0597 7.9322 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600598796.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:43 Heat of formation + Delta-G solvation = 72.688378 kcal Electronic energy + Delta-G solvation = -15528.324877 eV Core-core repulsion = 13011.397472 eV Total energy + Delta-G solvation = -2516.927405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.23644 -38.07540 -36.34793 -34.79065 -32.69819 -31.65493 -29.89698 -27.23778 -26.11228 -25.29357 -23.44804 -22.20905 -21.28579 -18.67092 -18.09153 -17.34010 -16.79164 -16.26756 -15.92201 -15.38688 -14.92029 -14.72786 -14.33777 -13.87599 -13.59168 -13.52485 -13.08028 -12.92582 -12.73977 -12.70092 -12.35811 -12.31236 -12.14558 -11.97586 -11.75686 -11.07863 -11.03078 -10.46674 -10.16793 -9.03299 -8.09106 -6.19140 0.57719 1.43465 1.45133 1.46050 1.55432 1.58392 2.45386 3.20193 3.35888 3.55693 3.79074 3.84528 3.91292 4.11173 4.23229 4.46893 4.59796 4.69868 4.73906 4.80294 4.88580 4.97881 5.08442 5.14748 5.25608 5.41512 5.66954 5.71977 5.82821 6.27419 6.59644 6.74052 6.93799 7.49900 7.50707 8.95877 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039044 B = 0.006613 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.958613 B = 4233.094630 C = 4458.245694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.279 5.279 4 N -0.112 5.112 5 N -0.305 5.305 6 C -0.048 4.048 7 C -0.002 4.002 8 C 0.136 3.864 9 N -0.683 5.683 10 C 0.217 3.783 11 H 0.014 0.986 12 C -0.158 4.158 13 C -0.516 4.516 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.061 0.939 22 H 0.113 0.887 23 H 0.050 0.950 24 H 0.129 0.871 25 H 0.117 0.883 26 H 0.204 0.796 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.330 0.670 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -4.968 -9.650 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.021 4.021 3 N -0.075 5.075 4 N -0.091 5.091 5 N -0.170 5.170 6 C -0.206 4.206 7 C -0.135 4.135 8 C 0.005 3.995 9 N -0.315 5.315 10 C 0.109 3.891 11 H 0.032 0.968 12 C -0.218 4.218 13 C -0.555 4.555 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.559 5.559 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.080 0.920 22 H 0.131 0.869 23 H 0.068 0.932 24 H 0.147 0.853 25 H 0.135 0.865 26 H 0.221 0.779 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.522 -4.359 -10.892 12.249 hybrid contribution -0.772 -0.529 1.730 1.967 sum 2.749 -4.888 -9.162 10.742 Atomic orbital electron populations 1.22208 0.92518 1.05338 1.02503 1.22495 0.96822 0.75365 1.07425 1.47698 1.41664 1.14262 1.03860 1.78116 1.18528 0.99646 1.12785 1.74990 1.17278 1.11102 1.13615 1.23722 1.06559 0.98996 0.91323 1.22335 1.05922 0.93374 0.91848 1.20356 0.92908 0.99789 0.86418 1.60785 1.02845 1.63233 1.04685 1.18966 0.95450 0.91025 0.83651 0.96825 1.22255 0.98011 0.98813 1.02685 1.21428 1.14873 1.22871 0.96330 0.93102 1.25594 0.99126 0.96235 0.97466 1.69972 1.41613 1.35913 1.08372 0.85623 0.79886 0.79129 0.77362 1.20223 1.21003 1.19897 0.92016 0.86858 0.93150 0.85333 0.86472 0.77877 0.88455 0.93194 0.85137 0.91901 0.94889 0.94735 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 71.98 0.74 -2.37 16 2 C 0.10 1.83 6.90 86.38 0.60 2.43 16 3 N -0.28 -7.67 3.34 -334.41 -1.12 -8.79 16 4 N -0.11 -3.63 13.16 37.02 0.49 -3.14 16 5 N -0.31 -10.54 12.41 -58.26 -0.72 -11.26 16 6 C -0.05 -1.49 11.99 83.73 1.00 -0.49 16 7 C 0.00 -0.05 6.51 41.36 0.27 0.22 16 8 C 0.14 4.19 5.71 85.56 0.49 4.67 16 9 N -0.68 -26.04 6.22 -499.46 -3.11 -29.15 16 10 C 0.22 10.01 2.57 44.17 0.11 10.12 16 11 H 0.01 0.70 7.80 -2.39 -0.02 0.68 16 12 C -0.16 -6.75 8.94 71.98 0.64 -6.10 16 13 C -0.52 -27.33 8.84 25.60 0.23 -27.11 16 14 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 15 C 0.01 0.77 5.30 84.66 0.45 1.21 16 16 N -0.92 -50.41 11.32 21.45 0.24 -50.17 16 17 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 23 H 0.05 1.18 5.88 -2.39 -0.01 1.17 16 24 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.12 1.85 7.22 -2.39 -0.02 1.83 16 26 H 0.20 5.37 8.06 -2.91 -0.02 5.35 16 27 H 0.10 2.99 8.06 -2.38 -0.02 2.97 16 28 H 0.05 1.38 6.61 -2.39 -0.02 1.36 16 29 H 0.33 11.85 6.20 -89.69 -0.56 11.30 16 30 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 31 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 32 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 33 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -62.40 276.34 2.89 -59.51 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.55 Total: 15.68 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 4.53 Total: -17.41 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.22 Total: -102.51 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -62.40 2.89 -59.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600598796.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.198 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds