Wall clock time and date at job start Thu Apr 9 2020 11:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34670 * 125.98790 * 2 1 4 4 N 1.36882 * 106.81632 * 180.11648 * 3 2 1 5 5 C 1.46500 * 126.39851 * 179.83779 * 4 3 2 6 6 C 1.52997 * 109.47473 * 264.69011 * 5 4 3 7 7 O 1.42898 * 109.47319 * 180.02562 * 6 5 4 8 8 C 1.42902 * 114.00186 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47205 * 179.97438 * 8 7 6 10 10 H 1.08008 * 120.00105 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00218 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47019 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47128 * 119.99695 * 13 11 9 16 16 H 1.48494 * 109.47116 * 239.99833 * 13 11 9 17 17 C 1.35042 * 107.20427 * 359.57731 * 4 3 2 18 18 C 1.50703 * 125.65124 * 180.22583 * 17 4 3 19 19 N 1.30495 * 108.70161 * 0.26556 * 17 4 3 20 20 H 1.08996 * 109.47125 * 270.33252 * 1 2 3 21 21 H 1.09001 * 109.47260 * 30.34078 * 1 2 3 22 22 H 1.09003 * 109.46641 * 150.33521 * 1 2 3 23 23 H 1.07999 * 126.59279 * 359.97178 * 3 2 1 24 24 H 1.09002 * 109.47129 * 144.68754 * 5 4 3 25 25 H 1.08998 * 109.46845 * 24.69560 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 28 28 H 1.09001 * 109.46918 * 299.99649 * 8 7 6 29 29 H 1.08999 * 109.46857 * 59.99535 * 8 7 6 30 30 H 0.96998 * 119.99585 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.47074 * 90.00051 * 18 17 4 32 32 H 1.08989 * 109.47538 * 210.00295 * 18 17 4 33 33 H 1.09005 * 109.47272 * 330.00576 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0027 5 6 4.7996 1.4685 -0.0070 6 6 5.2921 1.6446 -1.4448 7 8 6.4710 2.4521 -1.4489 8 6 7.0152 2.6796 -2.7506 9 6 8.2484 3.5382 -2.6364 10 1 8.5830 3.8767 -1.6669 11 6 8.9490 3.8926 -3.7698 12 7 8.5413 3.4808 -4.9504 13 14 10.4772 4.9574 -3.6284 14 1 10.7217 5.2854 -2.2009 15 1 11.6456 4.2215 -4.1748 16 1 10.2790 6.2123 -4.3972 17 6 3.5449 -0.7095 0.0053 18 6 4.7386 -1.6293 0.0106 19 7 2.2952 -1.0852 0.0068 20 1 -0.3633 0.0060 1.0276 21 1 -0.3634 0.8869 -0.5191 22 1 -0.3633 -0.8930 -0.5086 23 1 1.9750 2.1201 -0.0004 24 1 5.5749 0.9831 0.5858 25 1 4.5724 2.4446 0.4215 26 1 4.5167 2.1300 -2.0375 27 1 5.5192 0.6684 -1.8732 28 1 7.2776 1.7250 -3.2066 29 1 6.2756 3.1871 -3.3699 30 1 9.0344 3.7298 -5.7477 31 1 5.0265 -1.8450 1.0396 32 1 4.4832 -2.5590 -0.4977 33 1 5.5697 -1.1491 -0.5061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601081561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:50 Heat of formation + Delta-G solvation = -2.550177 kcal Electronic energy + Delta-G solvation = -14786.573988 eV Core-core repulsion = 12234.091244 eV Total energy + Delta-G solvation = -2552.482745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.07291 -37.14842 -34.52252 -32.80070 -32.19344 -29.87341 -28.70398 -27.02541 -25.35953 -22.88180 -22.37622 -20.40036 -19.69827 -16.80783 -16.60154 -15.59408 -15.43593 -15.21930 -14.39917 -14.18601 -13.77410 -13.60504 -13.18782 -12.72318 -12.67921 -12.52951 -12.41523 -11.99198 -11.92083 -11.27132 -10.95819 -10.92076 -10.86066 -10.21208 -9.87569 -9.43466 -9.23743 -9.02668 -8.35689 -8.13240 -6.21288 -4.24378 2.07575 2.77889 3.12352 3.22914 3.29732 3.35588 4.25196 4.44193 4.60535 4.75564 4.93650 5.15459 5.26605 5.31582 5.39031 5.43526 5.50543 5.54272 5.68501 5.77305 5.82142 5.90366 6.00305 6.06611 6.44300 6.85008 6.92245 7.26127 7.26485 7.66789 7.99570 8.17978 8.35089 8.87285 9.41009 10.90146 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.056172 B = 0.004537 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.347538 B = 6169.882205 C = 6311.633630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.008 4.008 3 C -0.056 4.056 4 N -0.448 5.448 5 C 0.105 3.895 6 C 0.052 3.948 7 O -0.393 6.393 8 C 0.197 3.803 9 C -0.519 4.519 10 H 0.068 0.932 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.910 3.090 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.209 3.791 18 C -0.072 4.072 19 N -0.494 5.494 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.172 0.828 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.265 0.735 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -5.779 9.243 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C -0.188 4.188 4 N -0.131 5.131 5 C -0.017 4.017 6 C -0.027 4.027 7 O -0.313 6.313 8 C 0.123 3.877 9 C -0.557 4.557 10 H 0.087 0.913 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.737 3.263 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.053 4.053 18 C -0.130 4.130 19 N -0.214 5.214 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.086 0.914 23 H 0.190 0.810 24 H 0.118 0.882 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.449 -6.390 9.212 15.326 hybrid contribution 0.951 1.409 -0.445 1.757 sum -9.498 -4.981 8.767 13.852 Atomic orbital electron populations 1.19973 0.87860 1.02430 1.01823 1.20677 0.96390 0.88611 1.08043 1.22472 0.82914 1.00449 1.12993 1.45313 1.06782 1.07101 1.53951 1.21729 0.84914 0.96091 0.98980 1.22431 0.90249 0.95852 0.94126 1.87801 1.39645 1.69870 1.33940 1.20280 0.93435 0.95820 0.78165 1.21060 1.09158 1.31462 0.94045 0.91348 1.24962 0.98276 0.96378 0.94810 1.69972 1.40147 1.45439 0.97983 0.86248 0.81880 0.79773 0.78416 1.19421 1.20723 1.20750 1.23276 0.95217 0.81742 1.05062 1.20234 0.91778 0.97547 1.03457 1.70111 0.99738 1.30379 1.21182 0.91753 0.91510 0.91415 0.81035 0.88230 0.88193 0.93775 0.93741 0.97411 0.97478 0.92536 0.90240 0.89257 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.42 36.00 0.38 -0.29 16 2 C -0.01 -0.12 7.09 -82.85 -0.59 -0.70 16 3 C -0.06 -0.75 11.48 -16.56 -0.19 -0.94 16 4 N -0.45 -6.40 2.75 -113.91 -0.31 -6.72 16 5 C 0.11 1.47 6.05 -4.04 -0.02 1.45 16 6 C 0.05 0.92 6.26 37.16 0.23 1.16 16 7 O -0.39 -8.97 10.33 -35.23 -0.36 -9.34 16 8 C 0.20 5.26 5.69 36.00 0.20 5.46 16 9 C -0.52 -14.88 9.43 -34.44 -0.32 -15.21 16 10 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 13 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.21 3.08 7.90 -155.42 -1.23 1.85 16 18 C -0.07 -0.82 10.04 36.01 0.36 -0.46 16 19 N -0.49 -7.91 11.25 -7.07 -0.08 -7.99 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 24 H 0.10 1.27 7.92 -51.93 -0.41 0.86 16 25 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.78 7.67 -51.93 -0.40 0.38 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.94 8.14 -51.94 -0.42 0.52 16 33 H 0.08 0.88 7.36 -51.93 -0.38 0.50 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -32.26 288.70 -6.93 -39.19 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.96 Total: -4.00 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.28 Total: -6.16 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.34 Total: -40.32 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.36 Total: -9.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.26 -6.93 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601081561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.640 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds