Wall clock time and date at job start Thu Apr 9 2020 11:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34670 * 125.98790 * 2 1 4 4 N 1.36882 * 106.81632 * 180.11648 * 3 2 1 5 5 C 1.46500 * 126.39851 * 179.83779 * 4 3 2 6 6 C 1.52997 * 109.47473 * 264.69011 * 5 4 3 7 7 O 1.42898 * 109.47319 * 180.02562 * 6 5 4 8 8 C 1.42902 * 114.00186 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47205 * 179.97438 * 8 7 6 10 10 H 1.08008 * 120.00105 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00218 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47019 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47128 * 119.99695 * 13 11 9 16 16 H 1.48494 * 109.47116 * 239.99833 * 13 11 9 17 17 C 1.35042 * 107.20427 * 359.57731 * 4 3 2 18 18 C 1.50703 * 125.65124 * 180.22583 * 17 4 3 19 19 N 1.30495 * 108.70161 * 0.26556 * 17 4 3 20 20 H 1.08996 * 109.47125 * 270.33252 * 1 2 3 21 21 H 1.09001 * 109.47260 * 30.34078 * 1 2 3 22 22 H 1.09003 * 109.46641 * 150.33521 * 1 2 3 23 23 H 1.07999 * 126.59279 * 359.97178 * 3 2 1 24 24 H 1.09002 * 109.47129 * 144.68754 * 5 4 3 25 25 H 1.08998 * 109.46845 * 24.69560 * 5 4 3 26 26 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 28 28 H 1.09001 * 109.46918 * 299.99649 * 8 7 6 29 29 H 1.08999 * 109.46857 * 59.99535 * 8 7 6 30 30 H 0.96998 * 119.99585 * 180.02562 * 12 11 9 31 31 H 1.09003 * 109.47074 * 90.00051 * 18 17 4 32 32 H 1.08989 * 109.47538 * 210.00295 * 18 17 4 33 33 H 1.09005 * 109.47272 * 330.00576 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0027 5 6 4.7996 1.4685 -0.0070 6 6 5.2921 1.6446 -1.4448 7 8 6.4710 2.4521 -1.4489 8 6 7.0152 2.6796 -2.7506 9 6 8.2484 3.5382 -2.6364 10 1 8.5830 3.8767 -1.6669 11 6 8.9490 3.8926 -3.7698 12 7 8.5413 3.4808 -4.9504 13 14 10.4772 4.9574 -3.6284 14 1 10.7217 5.2854 -2.2009 15 1 11.6456 4.2215 -4.1748 16 1 10.2790 6.2123 -4.3972 17 6 3.5449 -0.7095 0.0053 18 6 4.7386 -1.6293 0.0106 19 7 2.2952 -1.0852 0.0068 20 1 -0.3633 0.0060 1.0276 21 1 -0.3634 0.8869 -0.5191 22 1 -0.3633 -0.8930 -0.5086 23 1 1.9750 2.1201 -0.0004 24 1 5.5749 0.9831 0.5858 25 1 4.5724 2.4446 0.4215 26 1 4.5167 2.1300 -2.0375 27 1 5.5192 0.6684 -1.8732 28 1 7.2776 1.7250 -3.2066 29 1 6.2756 3.1871 -3.3699 30 1 9.0344 3.7298 -5.7477 31 1 5.0265 -1.8450 1.0396 32 1 4.4832 -2.5590 -0.4977 33 1 5.5697 -1.1491 -0.5061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601081561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:49 Heat of formation + Delta-G solvation = -22.375045 kcal Electronic energy + Delta-G solvation = -14787.433659 eV Core-core repulsion = 12234.091244 eV Total energy + Delta-G solvation = -2553.342415 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.14386 -38.88279 -35.81020 -34.84881 -33.19798 -31.11479 -29.91778 -28.85438 -26.43768 -24.63164 -24.03133 -21.44272 -20.79923 -18.72260 -18.07216 -17.00363 -16.94560 -16.82931 -16.14069 -15.29369 -15.18974 -14.90652 -14.19489 -14.12420 -13.98477 -13.64718 -13.33596 -13.22842 -12.98512 -12.93780 -12.81456 -12.53201 -12.51040 -12.08071 -11.35255 -11.00557 -10.94167 -10.58685 -10.39218 -9.16827 -8.36092 -6.49450 0.99269 1.40683 1.41657 1.55963 1.66578 2.05191 2.33571 2.98659 3.10092 3.49343 3.61412 3.84784 4.01665 4.18845 4.23738 4.37974 4.52688 4.55418 4.60697 4.67090 4.78223 4.90210 4.95922 5.06960 5.07670 5.15546 5.37978 5.50397 5.85457 5.87832 6.18679 6.38983 6.71362 7.10526 7.22639 8.76424 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.056172 B = 0.004537 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.347538 B = 6169.882205 C = 6311.633630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.027 4.027 3 C -0.063 4.063 4 N -0.453 5.453 5 C 0.119 3.881 6 C 0.050 3.950 7 O -0.400 6.400 8 C 0.210 3.790 9 C -0.550 4.550 10 H 0.067 0.933 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.273 1.273 17 C 0.196 3.804 18 C -0.070 4.070 19 N -0.525 5.525 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.197 0.803 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.039 0.961 27 H 0.043 0.957 28 H -0.011 1.011 29 H -0.013 1.013 30 H 0.271 0.729 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 -5.081 10.152 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.156 4.156 3 C -0.195 4.195 4 N -0.137 5.137 5 C -0.003 4.003 6 C -0.028 4.028 7 O -0.319 6.319 8 C 0.135 3.865 9 C -0.588 4.588 10 H 0.086 0.914 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.808 3.192 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.198 1.198 17 C -0.066 4.066 18 C -0.129 4.129 19 N -0.246 5.246 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.214 0.786 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.094 -5.705 10.135 15.400 hybrid contribution 0.729 1.124 -0.732 1.527 sum -9.366 -4.581 9.403 14.040 Atomic orbital electron populations 1.20061 0.85702 1.03175 1.02862 1.21318 0.98017 0.88432 1.07800 1.22969 0.82547 1.01604 1.12374 1.45373 1.07009 1.07073 1.54254 1.21594 0.85343 0.97191 0.96211 1.22622 0.88292 0.94821 0.97076 1.87742 1.41566 1.70893 1.31663 1.19898 0.92792 0.94387 0.79417 1.21412 1.10344 1.32564 0.94434 0.91445 1.25982 1.01633 0.97416 0.94140 1.70078 1.41688 1.46350 0.98890 0.85098 0.77368 0.77841 0.78887 1.18512 1.19720 1.19800 1.23860 0.95798 0.82336 1.04640 1.20337 0.90622 0.97148 1.04766 1.70122 1.00613 1.31544 1.22306 0.90518 0.89590 0.91820 0.78565 0.86740 0.86663 0.94255 0.93844 0.99275 0.99523 0.91963 0.88334 0.88748 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.42 71.24 0.74 -0.44 16 2 C -0.03 -0.75 7.09 41.39 0.29 -0.46 16 3 C -0.06 -1.62 11.48 83.09 0.95 -0.66 16 4 N -0.45 -12.36 2.75 -514.29 -1.42 -13.78 16 5 C 0.12 3.15 6.05 86.38 0.52 3.67 16 6 C 0.05 1.76 6.26 71.98 0.45 2.21 16 7 O -0.40 -18.26 10.33 -148.98 -1.54 -19.79 16 8 C 0.21 11.44 5.69 71.24 0.41 11.84 16 9 C -0.55 -31.70 9.43 25.60 0.24 -31.46 16 10 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 11 C 0.01 0.39 5.46 84.65 0.46 0.86 16 12 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 13 Si 0.99 43.03 29.54 68.60 2.03 45.05 16 14 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 C 0.20 5.58 7.90 138.13 1.09 6.68 16 18 C -0.07 -1.53 10.04 71.24 0.72 -0.82 16 19 N -0.52 -16.49 11.25 -176.29 -1.98 -18.48 16 20 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 21 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 24 H 0.11 2.71 7.92 -2.39 -0.02 2.69 16 25 H 0.12 2.72 8.13 -2.39 -0.02 2.70 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.53 7.67 -2.39 -0.02 1.52 16 28 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.68 7.36 -2.38 -0.02 1.66 16 Total: -1.00 -68.64 288.70 4.33 -64.32 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.07 Total: 5.92 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 5.88 Total: -8.58 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.11 Total: -86.92 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -1.54 Total: -19.79 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -68.64 4.33 -64.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601081561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.941 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds