Wall clock time and date at job start Thu Apr 9 2020 11:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46953 * 2 1 4 4 H 1.09004 * 109.46567 * 54.99992 * 3 2 1 5 5 C 1.53000 * 109.47467 * 295.00376 * 3 2 1 6 6 C 1.50696 * 109.46962 * 174.99917 * 3 2 1 7 7 N 1.27570 * 126.41765 * 4.96061 * 6 3 2 8 8 N 1.39144 * 113.16195 * 180.02562 * 7 6 3 9 9 C 1.46500 * 124.43833 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47522 * 269.97737 * 9 8 7 11 11 H 1.07995 * 119.99638 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00333 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99960 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47169 * 59.99777 * 14 12 10 16 16 H 1.48499 * 109.47182 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47213 * 299.99829 * 14 12 10 18 18 C 1.34952 * 111.12865 * 359.97438 * 8 7 6 19 19 O 1.21296 * 127.50698 * 179.97438 * 18 8 7 20 20 C 1.51446 * 126.41296 * 185.00123 * 6 3 2 21 21 H 1.08999 * 109.47119 * 299.99666 * 1 2 3 22 22 H 1.09004 * 109.47322 * 59.99624 * 1 2 3 23 23 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47119 * 240.00334 * 2 1 3 25 25 H 1.08990 * 109.47184 * 120.00350 * 2 1 3 26 26 H 1.08999 * 109.47109 * 59.99415 * 5 3 2 27 27 H 1.08999 * 109.47323 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46805 * 299.99934 * 5 3 2 29 29 H 1.09005 * 109.46832 * 29.97790 * 9 8 7 30 30 H 1.09000 * 109.47258 * 149.97636 * 9 8 7 31 31 H 0.96997 * 120.00059 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.61102 * 298.47842 * 20 6 3 33 33 H 1.09000 * 110.60455 * 61.45499 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5419 1.4444 0.1239 7 7 4.3027 0.4204 0.1274 8 7 5.6506 0.7405 0.2575 9 6 6.7361 -0.2427 0.2908 10 6 6.9917 -0.6609 1.7159 11 1 6.4045 -0.2364 2.5167 12 6 7.9751 -1.5854 1.9973 13 7 8.6898 -2.1026 1.0220 14 14 8.2913 -2.1042 3.7637 15 1 7.0586 -2.7078 4.3305 16 1 9.3909 -3.1016 3.7973 17 1 8.6753 -0.9160 4.5674 18 6 5.8269 2.0754 0.3490 19 8 6.8740 2.6753 0.4708 20 6 4.4305 2.6622 0.2683 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.5489 2.1253 -1.3968 27 1 1.9989 3.1542 -1.3075 28 1 2.0698 1.5877 -2.1492 29 1 6.4544 -1.1150 -0.2989 30 1 7.6407 0.2006 -0.1255 31 1 9.3819 -2.7528 1.2200 32 1 4.3373 3.3107 -0.6028 33 1 4.1894 3.2069 1.1811 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:52 Heat of formation + Delta-G solvation = -2.024195 kcal Electronic energy + Delta-G solvation = -15304.875596 eV Core-core repulsion = 12752.415659 eV Total energy + Delta-G solvation = -2552.459936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53253 -37.23764 -35.76650 -33.45698 -31.55767 -29.61111 -28.71643 -26.97758 -24.82441 -22.97238 -21.36670 -20.26516 -18.38302 -16.72209 -16.02820 -15.57961 -15.08262 -14.89733 -14.45753 -14.05735 -13.68622 -13.30910 -12.96697 -12.62311 -12.23276 -12.06294 -11.79372 -11.50890 -11.47672 -11.13631 -10.92889 -10.85965 -10.71840 -10.60304 -10.40251 -10.04396 -9.62688 -9.03221 -8.50431 -7.78080 -6.12518 -4.18156 2.11971 3.25004 3.30460 3.33401 3.39750 3.40389 4.21073 4.38665 4.45509 4.92637 5.02354 5.16126 5.22116 5.31634 5.37081 5.49784 5.53441 5.56802 5.76429 5.89355 5.95661 6.01331 6.15646 6.31556 6.43587 6.52629 7.11656 7.24459 7.33519 7.82175 8.07164 8.47329 8.63746 8.87104 9.46545 10.95845 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029586 B = 0.007252 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.180303 B = 3859.912524 C = 4420.365277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.006 4.006 4 H 0.091 0.909 5 C -0.145 4.145 6 C 0.050 3.950 7 N -0.209 5.209 8 N -0.443 5.443 9 C 0.267 3.733 10 C -0.533 4.533 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.894 5.894 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.489 3.511 19 O -0.509 6.509 20 C -0.172 4.172 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.121 0.879 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 6.608 -3.227 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.026 4.026 4 H 0.109 0.891 5 C -0.203 4.203 6 C -0.143 4.143 7 N -0.016 5.016 8 N -0.262 5.262 9 C 0.149 3.851 10 C -0.571 4.571 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.201 1.201 18 C 0.275 3.725 19 O -0.384 6.384 20 C -0.214 4.214 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.962 5.682 -3.246 16.331 hybrid contribution 0.433 0.442 1.070 1.236 sum -14.529 6.125 -2.177 15.917 Atomic orbital electron populations 1.21838 0.95879 1.01678 1.01567 1.21482 0.95122 0.95121 1.03789 1.19648 0.85533 0.98115 0.99324 0.89087 1.21866 1.01558 1.00418 0.96488 1.25025 0.96446 0.90911 1.01909 1.74526 0.90733 1.26847 1.09460 1.50446 1.02932 1.07264 1.65528 1.19445 0.81214 0.86073 0.98342 1.21322 1.18900 1.24641 0.92283 0.92329 1.24919 0.95327 0.95677 0.97987 1.69914 1.22136 1.29457 1.31716 0.86456 0.77903 0.78378 0.84141 1.20066 1.20951 1.20078 1.21191 0.90507 0.83720 0.77044 1.90715 1.31680 1.66317 1.49654 1.22064 0.94219 0.99259 1.05897 0.92857 0.92611 0.92718 0.91162 0.91002 0.91520 0.92331 0.92207 0.93473 0.93131 0.92382 0.86110 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 37.16 0.36 -0.94 16 2 C -0.12 -1.33 4.91 -26.73 -0.13 -1.46 16 3 C -0.01 -0.06 2.85 -91.77 -0.26 -0.33 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.25 8.93 37.16 0.33 -0.92 16 6 C 0.05 0.77 6.53 -78.72 -0.51 0.26 16 7 N -0.21 -4.20 11.33 35.53 0.40 -3.80 16 8 N -0.44 -10.51 3.52 -61.06 -0.22 -10.73 16 9 C 0.27 7.35 5.99 -5.19 -0.03 7.32 16 10 C -0.53 -15.69 9.39 -34.44 -0.32 -16.01 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 13 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 14 Si 0.90 22.20 29.54 -169.99 -5.02 17.17 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 C 0.49 10.87 8.43 -10.42 -0.09 10.78 16 19 O -0.51 -13.04 17.81 5.54 0.10 -12.94 16 20 C -0.17 -2.64 6.93 -28.18 -0.20 -2.84 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 26 H 0.07 0.46 6.56 -51.93 -0.34 0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.49 8.04 -51.93 -0.42 1.07 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -33.31 284.60 -5.53 -38.84 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -4.87 Total: -4.45 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.95 Total: -2.39 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.92 Total: -40.53 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.10 Total: -12.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.31 -5.53 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.821 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds