Wall clock time and date at job start Thu Apr 9 2020 11:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46953 * 2 1 4 4 H 1.09004 * 109.46567 * 54.99992 * 3 2 1 5 5 C 1.53000 * 109.47467 * 295.00376 * 3 2 1 6 6 C 1.50696 * 109.46962 * 174.99917 * 3 2 1 7 7 N 1.27570 * 126.41765 * 4.96061 * 6 3 2 8 8 N 1.39144 * 113.16195 * 180.02562 * 7 6 3 9 9 C 1.46500 * 124.43833 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47522 * 269.97737 * 9 8 7 11 11 H 1.07995 * 119.99638 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00333 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99960 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99994 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47169 * 59.99777 * 14 12 10 16 16 H 1.48499 * 109.47182 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47213 * 299.99829 * 14 12 10 18 18 C 1.34952 * 111.12865 * 359.97438 * 8 7 6 19 19 O 1.21296 * 127.50698 * 179.97438 * 18 8 7 20 20 C 1.51446 * 126.41296 * 185.00123 * 6 3 2 21 21 H 1.08999 * 109.47119 * 299.99666 * 1 2 3 22 22 H 1.09004 * 109.47322 * 59.99624 * 1 2 3 23 23 H 1.08998 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47119 * 240.00334 * 2 1 3 25 25 H 1.08990 * 109.47184 * 120.00350 * 2 1 3 26 26 H 1.08999 * 109.47109 * 59.99415 * 5 3 2 27 27 H 1.08999 * 109.47323 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46805 * 299.99934 * 5 3 2 29 29 H 1.09005 * 109.46832 * 29.97790 * 9 8 7 30 30 H 1.09000 * 109.47258 * 149.97636 * 9 8 7 31 31 H 0.96997 * 120.00059 * 179.97438 * 13 12 10 32 32 H 1.08997 * 110.61102 * 298.47842 * 20 6 3 33 33 H 1.09000 * 110.60455 * 61.45499 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5419 1.4444 0.1239 7 7 4.3027 0.4204 0.1274 8 7 5.6506 0.7405 0.2575 9 6 6.7361 -0.2427 0.2908 10 6 6.9917 -0.6609 1.7159 11 1 6.4045 -0.2364 2.5167 12 6 7.9751 -1.5854 1.9973 13 7 8.6898 -2.1026 1.0220 14 14 8.2913 -2.1042 3.7637 15 1 7.0586 -2.7078 4.3305 16 1 9.3909 -3.1016 3.7973 17 1 8.6753 -0.9160 4.5674 18 6 5.8269 2.0754 0.3490 19 8 6.8740 2.6753 0.4708 20 6 4.4305 2.6622 0.2683 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 0.5489 2.1253 -1.3968 27 1 1.9989 3.1542 -1.3075 28 1 2.0698 1.5877 -2.1492 29 1 6.4544 -1.1150 -0.2989 30 1 7.6407 0.2006 -0.1255 31 1 9.3819 -2.7528 1.2200 32 1 4.3373 3.3107 -0.6028 33 1 4.1894 3.2069 1.1811 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:52 Heat of formation + Delta-G solvation = -24.931819 kcal Electronic energy + Delta-G solvation = -15305.868945 eV Core-core repulsion = 12752.415659 eV Total energy + Delta-G solvation = -2553.453285 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09209 -38.74109 -37.04287 -35.49617 -33.30673 -30.65158 -30.13412 -28.79888 -25.90098 -24.88022 -22.48447 -21.76301 -19.77603 -18.88699 -17.77002 -17.11967 -16.57021 -16.24534 -15.92664 -15.44362 -15.13038 -14.60139 -14.27308 -14.16407 -13.69358 -13.37894 -13.32042 -12.81878 -12.74712 -12.70817 -12.43096 -12.38168 -12.09543 -11.83966 -11.69880 -11.47720 -11.41216 -10.79228 -10.59996 -9.56679 -8.34835 -6.51900 0.73642 1.31609 1.36619 1.43993 1.64534 1.76426 2.32156 2.88594 2.96914 3.13084 3.84531 4.13579 4.20829 4.33535 4.36884 4.62849 4.72125 4.73464 4.78735 4.88037 4.95023 5.16194 5.18771 5.28244 5.32700 5.35898 5.48471 5.57317 5.64088 5.66013 5.84010 6.51714 6.80484 7.05232 7.19980 8.73180 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029586 B = 0.007252 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.180303 B = 3859.912524 C = 4420.365277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.005 4.005 4 H 0.127 0.873 5 C -0.142 4.142 6 C 0.095 3.905 7 N -0.265 5.265 8 N -0.464 5.464 9 C 0.282 3.718 10 C -0.556 4.556 11 H 0.049 0.951 12 C 0.012 3.988 13 N -0.924 5.924 14 Si 0.976 3.024 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.466 3.534 19 O -0.562 6.562 20 C -0.155 4.155 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.273 0.727 32 H 0.164 0.836 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.867 7.970 -2.351 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.025 4.025 4 H 0.145 0.855 5 C -0.200 4.200 6 C -0.098 4.098 7 N -0.071 5.071 8 N -0.281 5.281 9 C 0.162 3.838 10 C -0.594 4.594 11 H 0.068 0.932 12 C -0.188 4.188 13 N -0.563 5.563 14 Si 0.799 3.201 15 H -0.189 1.189 16 H -0.194 1.194 17 H -0.197 1.197 18 C 0.255 3.745 19 O -0.441 6.441 20 C -0.196 4.196 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.890 7.038 -2.389 19.373 hybrid contribution 1.184 0.063 0.722 1.388 sum -16.706 7.102 -1.667 18.229 Atomic orbital electron populations 1.21792 0.93209 1.02137 1.03122 1.21469 0.97391 0.95201 1.01657 1.20034 0.81745 0.98467 1.02280 0.85532 1.21892 1.03342 1.00750 0.94026 1.26126 0.98251 0.89841 0.95605 1.74650 0.89005 1.28686 1.14745 1.50316 1.04146 1.07256 1.66428 1.18806 0.81754 0.86036 0.97158 1.21535 1.19626 1.25521 0.92752 0.93231 1.25910 0.94645 0.95287 1.02952 1.70026 1.22439 1.29716 1.34103 0.85341 0.78459 0.78213 0.78063 1.18857 1.19420 1.19729 1.22353 0.92783 0.83366 0.75972 1.90664 1.34160 1.67046 1.52188 1.22161 0.88839 0.99246 1.09377 0.91454 0.90777 0.92998 0.93051 0.93650 0.88822 0.90473 0.93601 0.95546 0.96682 0.91821 0.81916 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.12 -2.48 4.91 30.60 0.15 -2.33 16 3 C -0.01 -0.09 2.85 -11.54 -0.03 -0.13 16 4 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 5 C -0.14 -1.76 8.93 71.98 0.64 -1.12 16 6 C 0.09 2.68 6.53 46.83 0.31 2.99 16 7 N -0.26 -10.79 11.33 -40.84 -0.46 -11.26 16 8 N -0.46 -23.01 3.52 -465.38 -1.64 -24.65 16 9 C 0.28 16.65 5.99 85.63 0.51 17.16 16 10 C -0.56 -34.22 9.39 25.60 0.24 -33.98 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 12 C 0.01 0.72 5.46 84.65 0.46 1.18 16 13 N -0.92 -57.08 13.29 21.45 0.28 -56.79 16 14 Si 0.98 46.08 29.54 68.60 2.03 48.10 16 15 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 C 0.47 21.08 8.43 87.94 0.74 21.82 16 19 O -0.56 -29.93 17.81 -3.08 -0.05 -29.98 16 20 C -0.16 -4.29 6.93 29.65 0.21 -4.09 16 21 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.07 0.76 6.57 -2.38 -0.02 0.75 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 26 H 0.09 0.74 6.56 -2.39 -0.02 0.73 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 31 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 32 H 0.16 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -78.63 284.60 5.16 -73.47 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.08 Total: 0.90 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 3.92 Total: 0.20 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -1.82 Total: -92.70 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.05 Total: -29.98 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -78.63 5.16 -73.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.542 kcal (2) G-P(sol) polarization free energy of solvation -78.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds