Wall clock time and date at job start Thu Apr 9 2020 11:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27573 * 126.41712 * 2 1 4 4 N 1.39150 * 113.16273 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43376 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47786 * 300.03037 * 5 4 3 7 7 C 1.53006 * 109.47260 * 60.03218 * 5 4 3 8 8 C 1.34943 * 111.12325 * 0.02562 * 4 3 2 9 9 O 1.21302 * 127.50245 * 179.97438 * 8 4 3 10 10 C 1.51437 * 126.41716 * 179.97438 * 2 1 3 11 11 H 1.09001 * 110.60784 * 298.70956 * 10 2 1 12 12 C 1.53006 * 110.60811 * 61.51752 * 10 2 1 13 13 C 1.50698 * 109.47184 * 184.99825 * 12 10 2 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 H 1.08992 * 109.47372 * 270.03962 * 1 2 3 22 22 H 1.09003 * 109.47085 * 30.03655 * 1 2 3 23 23 H 1.08996 * 109.47165 * 150.03333 * 1 2 3 24 24 H 1.09003 * 109.46984 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.46972 * 59.99503 * 6 5 4 26 26 H 1.08994 * 109.47612 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46903 * 300.00333 * 6 5 4 28 28 H 1.08992 * 109.46638 * 299.99906 * 7 5 4 29 29 H 1.09003 * 109.46803 * 59.99813 * 7 5 4 30 30 H 1.08998 * 109.46986 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.47002 * 65.00421 * 12 10 2 32 32 H 1.08993 * 109.46955 * 304.99984 * 12 10 2 33 33 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 4.5940 2.5712 -1.2475 7 6 4.5937 2.5697 1.2510 8 6 3.8036 -0.6292 0.0004 9 8 4.8579 -1.2289 0.0004 10 6 2.4060 -1.2186 0.0005 11 1 2.2394 -1.8179 0.8957 12 6 2.1762 -2.0580 -1.2579 13 6 2.9908 -3.3230 -1.1737 14 1 3.6102 -3.5099 -0.3089 15 6 2.9445 -4.2424 -2.2002 16 7 2.1899 -4.0151 -3.2530 17 14 3.9538 -5.8108 -2.0954 18 1 3.7308 -6.6255 -3.3169 19 1 3.5392 -6.5873 -0.8995 20 1 5.3942 -5.4663 -1.9870 21 1 -0.3634 0.0007 1.0276 22 1 -0.3633 0.8897 -0.5144 23 1 -0.3633 -0.8902 -0.5133 24 1 5.6626 1.1783 0.0011 25 1 3.6335 3.0865 -1.2474 26 1 5.4003 3.3046 -1.2472 27 1 4.6713 1.9471 -2.1379 28 1 3.6333 3.0850 1.2512 29 1 4.6708 1.9446 2.1406 30 1 5.4000 3.3031 1.2517 31 1 2.4804 -1.4878 -2.1356 32 1 1.1190 -2.3112 -1.3376 33 1 1.6655 -3.2009 -3.3072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601935459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:55 Heat of formation + Delta-G solvation = -1.126133 kcal Electronic energy + Delta-G solvation = -15734.805901 eV Core-core repulsion = 13182.384908 eV Total energy + Delta-G solvation = -2552.420993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.79951 -36.80472 -35.72695 -33.54485 -31.37834 -30.22448 -27.68253 -27.16513 -25.44850 -22.70832 -21.48606 -20.26114 -18.60894 -16.83099 -16.46753 -15.45408 -14.83273 -14.36831 -13.89984 -13.67894 -13.39461 -13.35589 -13.05476 -12.34355 -12.24094 -12.20357 -12.13939 -11.91721 -11.55266 -11.44419 -11.00783 -10.94387 -10.67386 -10.30923 -10.10095 -9.81775 -9.10002 -8.52046 -8.32031 -8.13446 -6.35917 -4.04806 2.12893 2.80775 3.21156 3.47744 3.52475 3.69784 4.38773 4.54900 4.70772 4.99685 5.12426 5.27292 5.37040 5.44791 5.59848 5.63034 5.66904 5.79737 5.83972 5.84840 5.93231 6.04065 6.17951 6.26390 6.33519 6.65512 6.88782 7.09545 7.20666 8.09580 8.18525 8.47782 8.54481 8.87331 9.64637 11.04475 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.008416 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.542732 B = 3326.241345 C = 3805.226217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.252 5.252 4 N -0.478 5.478 5 C 0.161 3.839 6 C -0.158 4.158 7 C -0.156 4.156 8 C 0.509 3.491 9 O -0.487 6.487 10 C -0.125 4.125 11 H 0.121 0.879 12 C 0.043 3.957 13 C -0.594 4.594 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 1.069 2.931 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.287 1.287 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.009 0.991 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 11.763 7.137 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 N -0.058 5.058 4 N -0.300 5.300 5 C 0.059 3.941 6 C -0.216 4.216 7 C -0.214 4.214 8 C 0.297 3.703 9 O -0.357 6.357 10 C -0.149 4.149 11 H 0.139 0.861 12 C 0.005 3.995 13 C -0.633 4.633 14 H 0.076 0.924 15 C -0.186 4.186 16 N -0.550 5.550 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.214 1.214 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.115 0.885 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.033 11.107 6.331 12.784 hybrid contribution -0.178 0.715 0.816 1.100 sum -0.211 11.822 7.147 13.816 Atomic orbital electron populations 1.20293 0.85423 1.04223 1.03308 1.25438 0.97274 0.91886 0.95361 1.74390 0.89236 1.26947 1.15266 1.49927 1.02528 1.06208 1.71361 1.20959 0.88255 0.88976 0.95877 1.22100 1.02591 0.99615 0.97285 1.22092 1.02680 0.99580 0.97032 1.21390 0.91918 0.82014 0.74961 1.90710 1.31147 1.65907 1.47927 1.21894 0.91012 0.96294 1.05691 0.86145 1.18979 0.97897 0.94162 0.88460 1.21994 1.29163 1.04181 1.07930 0.92440 1.25819 0.97576 1.02779 0.92411 1.70816 1.26709 1.28152 1.29322 0.83537 0.75824 0.75058 0.75859 1.20823 1.21335 1.21352 0.89922 0.90416 0.89267 0.88458 0.91553 0.91547 0.92352 0.91540 0.92644 0.91518 0.97279 0.95447 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.49 36.01 0.38 -0.54 16 2 C 0.09 1.60 6.93 -78.72 -0.55 1.05 16 3 N -0.25 -4.44 11.78 35.53 0.42 -4.02 16 4 N -0.48 -9.08 3.24 -53.40 -0.17 -9.25 16 5 C 0.16 2.49 3.60 -67.93 -0.24 2.25 16 6 C -0.16 -2.14 9.41 37.16 0.35 -1.79 16 7 C -0.16 -1.93 9.41 37.16 0.35 -1.58 16 8 C 0.51 11.56 7.60 -10.43 -0.08 11.48 16 9 O -0.49 -12.65 16.79 5.54 0.09 -12.56 16 10 C -0.13 -2.66 2.96 -92.08 -0.27 -2.93 16 11 H 0.12 2.46 8.14 -51.93 -0.42 2.04 16 12 C 0.04 1.09 3.80 -27.88 -0.11 0.98 16 13 C -0.59 -17.23 8.44 -34.44 -0.29 -17.52 16 14 H 0.06 1.71 7.44 -52.48 -0.39 1.32 16 15 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 16 N -0.91 -28.04 13.65 55.43 0.76 -27.29 16 17 Si 1.07 26.29 29.90 -169.99 -5.08 21.21 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 24 H 0.10 1.56 7.68 -51.93 -0.40 1.17 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.01 0.25 7.99 -51.93 -0.41 -0.17 16 32 H 0.03 0.67 7.30 -51.93 -0.38 0.29 16 33 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -33.83 283.11 -5.15 -38.98 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.86 Total: -3.16 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.56 Total: -8.17 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 1.00 Total: -40.56 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.08 Total: 21.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.83 -5.15 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.852 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds