Wall clock time and date at job start Thu Apr 9 2020 11:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27573 * 126.41712 * 2 1 4 4 N 1.39150 * 113.16273 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43376 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47786 * 300.03037 * 5 4 3 7 7 C 1.53006 * 109.47260 * 60.03218 * 5 4 3 8 8 C 1.34943 * 111.12325 * 0.02562 * 4 3 2 9 9 O 1.21302 * 127.50245 * 179.97438 * 8 4 3 10 10 C 1.51437 * 126.41716 * 179.97438 * 2 1 3 11 11 H 1.09001 * 110.60784 * 298.70956 * 10 2 1 12 12 C 1.53006 * 110.60811 * 61.51752 * 10 2 1 13 13 C 1.50698 * 109.47184 * 184.99825 * 12 10 2 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 H 1.08992 * 109.47372 * 270.03962 * 1 2 3 22 22 H 1.09003 * 109.47085 * 30.03655 * 1 2 3 23 23 H 1.08996 * 109.47165 * 150.03333 * 1 2 3 24 24 H 1.09003 * 109.46984 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.46972 * 59.99503 * 6 5 4 26 26 H 1.08994 * 109.47612 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.46903 * 300.00333 * 6 5 4 28 28 H 1.08992 * 109.46638 * 299.99906 * 7 5 4 29 29 H 1.09003 * 109.46803 * 59.99813 * 7 5 4 30 30 H 1.08998 * 109.46986 * 179.97438 * 7 5 4 31 31 H 1.09001 * 109.47002 * 65.00421 * 12 10 2 32 32 H 1.08993 * 109.46955 * 304.99984 * 12 10 2 33 33 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 4.5940 2.5712 -1.2475 7 6 4.5937 2.5697 1.2510 8 6 3.8036 -0.6292 0.0004 9 8 4.8579 -1.2289 0.0004 10 6 2.4060 -1.2186 0.0005 11 1 2.2394 -1.8179 0.8957 12 6 2.1762 -2.0580 -1.2579 13 6 2.9908 -3.3230 -1.1737 14 1 3.6102 -3.5099 -0.3089 15 6 2.9445 -4.2424 -2.2002 16 7 2.1899 -4.0151 -3.2530 17 14 3.9538 -5.8108 -2.0954 18 1 3.7308 -6.6255 -3.3169 19 1 3.5392 -6.5873 -0.8995 20 1 5.3942 -5.4663 -1.9870 21 1 -0.3634 0.0007 1.0276 22 1 -0.3633 0.8897 -0.5144 23 1 -0.3633 -0.8902 -0.5133 24 1 5.6626 1.1783 0.0011 25 1 3.6335 3.0865 -1.2474 26 1 5.4003 3.3046 -1.2472 27 1 4.6713 1.9471 -2.1379 28 1 3.6333 3.0850 1.2512 29 1 4.6708 1.9446 2.1406 30 1 5.4000 3.3031 1.2517 31 1 2.4804 -1.4878 -2.1356 32 1 1.1190 -2.3112 -1.3376 33 1 1.6655 -3.2009 -3.3072 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601935459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:55 Heat of formation + Delta-G solvation = -23.661288 kcal Electronic energy + Delta-G solvation = -15735.783099 eV Core-core repulsion = 13182.384908 eV Total energy + Delta-G solvation = -2553.398191 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.38434 -38.54660 -37.12179 -35.59366 -32.79286 -32.02907 -28.94774 -28.21133 -27.42015 -24.74401 -22.80090 -21.93406 -20.17026 -18.94300 -17.94748 -17.11661 -16.43879 -16.00353 -15.66805 -15.23439 -14.87863 -14.61110 -14.45294 -14.07910 -13.80409 -13.50901 -13.43730 -13.21666 -13.20566 -12.77875 -12.62465 -12.44301 -12.14074 -12.02479 -11.93699 -11.57417 -11.00691 -10.61079 -10.43538 -9.64704 -8.70966 -6.40159 0.60285 1.36660 1.48621 1.56891 1.57118 1.77291 2.52294 2.89989 3.13446 3.20718 3.73032 3.93694 3.98803 4.11603 4.16141 4.42846 4.55638 4.63668 4.66366 4.78582 4.80172 4.82305 4.94943 5.02786 5.09290 5.17127 5.19816 5.33624 5.54799 5.89838 6.15381 6.53743 6.65005 6.85602 7.35861 8.70522 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.008416 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.542732 B = 3326.241345 C = 3805.226217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.110 3.890 3 N -0.251 5.251 4 N -0.474 5.474 5 C 0.145 3.855 6 C -0.149 4.149 7 C -0.144 4.144 8 C 0.493 3.507 9 O -0.535 6.535 10 C -0.131 4.131 11 H 0.127 0.873 12 C 0.053 3.947 13 C -0.608 4.608 14 H 0.043 0.957 15 C -0.032 4.032 16 N -0.934 5.934 17 Si 1.110 2.890 18 H -0.277 1.277 19 H -0.262 1.262 20 H -0.286 1.286 21 H 0.116 0.884 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.099 0.901 31 H -0.021 1.021 32 H 0.036 0.964 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 12.969 8.079 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 N -0.057 5.057 4 N -0.294 5.294 5 C 0.044 3.956 6 C -0.207 4.207 7 C -0.201 4.201 8 C 0.281 3.719 9 O -0.410 6.410 10 C -0.155 4.155 11 H 0.145 0.855 12 C 0.015 3.985 13 C -0.646 4.646 14 H 0.061 0.939 15 C -0.229 4.229 16 N -0.571 5.571 17 Si 0.932 3.068 18 H -0.201 1.201 19 H -0.187 1.187 20 H -0.212 1.212 21 H 0.134 0.866 22 H 0.118 0.882 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.118 0.882 31 H -0.003 1.003 32 H 0.054 0.946 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.825 12.375 7.288 14.385 hybrid contribution 0.038 0.411 0.531 0.672 sum -0.787 12.786 7.818 15.008 Atomic orbital electron populations 1.20547 0.81574 1.05210 1.05736 1.26029 0.99070 0.89282 0.93916 1.74471 0.88371 1.26541 1.16349 1.50142 1.03897 1.05574 1.69818 1.21377 0.86686 0.88894 0.98606 1.22051 1.04202 0.99443 0.94996 1.22013 1.04168 0.99325 0.94637 1.21670 0.91785 0.83578 0.74886 1.90659 1.32608 1.67232 1.50503 1.21814 0.91931 0.97777 1.03955 0.85530 1.18738 0.97495 0.93094 0.89210 1.22308 1.29187 1.05710 1.07417 0.93855 1.27199 0.97955 1.05828 0.91963 1.70928 1.27872 1.28135 1.30169 0.83015 0.74493 0.72219 0.77051 1.20149 1.18718 1.21178 0.86598 0.88177 0.89407 0.89795 0.91221 0.87980 0.94858 0.91204 0.93551 0.88219 1.00314 0.94636 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.49 71.24 0.75 -0.82 16 2 C 0.11 3.58 6.93 46.83 0.32 3.91 16 3 N -0.25 -8.48 11.78 -40.84 -0.48 -8.96 16 4 N -0.47 -17.90 3.24 -441.16 -1.43 -19.33 16 5 C 0.14 4.37 3.60 45.00 0.16 4.53 16 6 C -0.15 -3.82 9.41 71.98 0.68 -3.14 16 7 C -0.14 -3.24 9.41 71.98 0.68 -2.56 16 8 C 0.49 22.89 7.60 87.94 0.67 23.56 16 9 O -0.54 -29.00 16.79 -3.10 -0.05 -29.05 16 10 C -0.13 -5.59 2.96 -11.74 -0.03 -5.62 16 11 H 0.13 5.19 8.14 -2.39 -0.02 5.17 16 12 C 0.05 2.72 3.80 29.85 0.11 2.83 16 13 C -0.61 -35.99 8.44 25.60 0.22 -35.77 16 14 H 0.04 2.64 7.44 -2.91 -0.02 2.62 16 15 C -0.03 -1.88 5.46 84.65 0.46 -1.42 16 16 N -0.93 -58.02 13.65 21.45 0.29 -57.73 16 17 Si 1.11 53.03 29.90 68.60 2.05 55.08 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.09 1.98 7.44 -2.39 -0.02 1.96 16 24 H 0.08 2.74 7.68 -2.39 -0.02 2.72 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H -0.02 -1.23 7.99 -2.39 -0.02 -1.25 16 32 H 0.04 1.76 7.30 -2.39 -0.02 1.74 16 33 H 0.26 15.92 7.22 -92.71 -0.67 15.25 16 Total: -1.00 -75.14 283.11 5.58 -69.56 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.18 Total: 4.93 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.01 Total: -14.50 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.62 Total: -86.02 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.05 Total: -29.05 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.05 Total: 55.08 kcal Total: -75.14 5.58 -69.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.902 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds