Wall clock time and date at job start Thu Apr 9 2020 11:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27572 * 126.41769 * 2 1 4 4 N 1.39141 * 113.16341 * 180.02562 * 3 2 1 5 5 C 1.46509 * 124.44009 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47007 * 299.97829 * 5 4 3 7 7 C 1.53000 * 109.46837 * 59.97414 * 5 4 3 8 8 C 1.35306 * 111.16816 * 0.09295 * 4 3 2 9 9 O 1.21294 * 127.68488 * 179.91349 * 8 4 3 10 10 C 1.51433 * 126.41417 * 180.02562 * 2 1 3 11 11 H 1.08997 * 110.61120 * 61.29375 * 10 2 1 12 12 C 1.52996 * 110.60870 * 298.47595 * 10 2 1 13 13 C 1.50702 * 109.47159 * 177.15151 * 12 10 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09003 * 109.47088 * 269.96078 * 1 2 3 22 22 H 1.09007 * 109.46954 * 29.95086 * 1 2 3 23 23 H 1.08998 * 109.47530 * 149.95628 * 1 2 3 24 24 H 1.08996 * 109.47267 * 179.97438 * 5 4 3 25 25 H 1.08992 * 109.47165 * 179.97438 * 6 5 4 26 26 H 1.08995 * 109.46713 * 299.99941 * 6 5 4 27 27 H 1.09006 * 109.46819 * 59.99483 * 6 5 4 28 28 H 1.09000 * 109.47478 * 60.00253 * 7 5 4 29 29 H 1.09004 * 109.46973 * 180.02562 * 7 5 4 30 30 H 1.09000 * 109.47009 * 300.00435 * 7 5 4 31 31 H 1.09004 * 109.47066 * 57.15354 * 12 10 2 32 32 H 1.08994 * 109.47405 * 297.15184 * 12 10 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 4.7022 1.6937 -0.0012 6 6 4.5937 2.5698 -1.2509 7 6 4.5941 2.5710 1.2476 8 6 3.8050 -0.6326 -0.0030 9 8 4.8579 -1.2349 -0.0056 10 6 2.4059 -1.2187 -0.0005 11 1 2.2394 -1.8179 -0.8956 12 6 2.1761 -2.0579 1.2579 13 6 3.0309 -3.2976 1.1979 14 1 3.6740 -3.4696 0.3475 15 6 2.9965 -4.2094 2.2317 16 7 2.2136 -3.9998 3.2674 17 14 4.0617 -5.7422 2.1609 18 1 4.8457 -5.7424 0.8998 19 1 4.9898 -5.7540 3.3202 20 1 3.1969 -6.9486 2.2069 21 1 -0.3633 -0.0007 1.0277 22 1 -0.3633 0.8905 -0.5131 23 1 -0.3634 -0.8895 -0.5145 24 1 5.6626 1.1783 -0.0011 25 1 5.3995 3.3037 -1.2512 26 1 4.6706 1.9448 -2.1405 27 1 3.6332 3.0852 -1.2509 28 1 4.6714 1.9469 2.1379 29 1 5.4000 3.3050 1.2469 30 1 3.6336 3.0864 1.2475 31 1 1.1258 -2.3433 1.3175 32 1 2.4445 -1.4739 2.1381 33 1 2.1891 -4.6415 3.9946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601935460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:56 Heat of formation + Delta-G solvation = -19.776602 kcal Electronic energy + Delta-G solvation = -15705.080593 eV Core-core repulsion = 13151.850854 eV Total energy + Delta-G solvation = -2553.229738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24589 -38.45400 -36.98496 -35.26044 -32.78444 -32.07746 -28.88520 -28.16207 -27.78200 -24.57221 -22.68502 -21.73577 -20.10414 -18.45272 -17.82893 -17.11783 -16.56129 -16.05837 -15.81570 -15.10501 -14.65190 -14.42141 -14.38237 -14.12109 -13.51961 -13.38292 -13.24831 -13.16339 -13.13579 -12.84217 -12.68885 -12.58151 -12.21902 -12.08045 -11.86210 -11.54673 -11.23076 -10.66210 -10.40558 -9.55112 -8.24509 -6.31995 0.70929 1.34628 1.36746 1.45625 1.50617 1.66111 2.38874 3.00326 3.11142 3.31948 3.81216 4.02854 4.04776 4.17384 4.32875 4.53288 4.67706 4.70506 4.72667 4.83450 4.87727 4.90655 5.03885 5.22174 5.24424 5.32450 5.35914 5.41554 5.64596 5.73993 6.13543 6.73833 6.79241 6.94840 7.35815 8.86909 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.008444 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.141348 B = 3315.049519 C = 3802.644907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.112 3.888 3 N -0.254 5.254 4 N -0.476 5.476 5 C 0.146 3.854 6 C -0.144 4.144 7 C -0.149 4.149 8 C 0.494 3.506 9 O -0.535 6.535 10 C -0.137 4.137 11 H 0.129 0.871 12 C 0.068 3.932 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.955 3.045 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.039 0.961 32 H -0.016 1.016 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 12.568 -7.405 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 N -0.060 5.060 4 N -0.297 5.297 5 C 0.045 3.955 6 C -0.201 4.201 7 C -0.207 4.207 8 C 0.283 3.717 9 O -0.410 6.410 10 C -0.161 4.161 11 H 0.146 0.854 12 C 0.030 3.970 13 C -0.570 4.570 14 H 0.069 0.931 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.781 3.219 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.191 1.191 21 H 0.112 0.888 22 H 0.125 0.875 23 H 0.119 0.881 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.002 0.998 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.474 13.280 -7.257 15.205 hybrid contribution 0.945 -1.899 0.396 2.158 sum -0.529 11.381 -6.860 13.299 Atomic orbital electron populations 1.20522 0.81695 1.05792 1.04945 1.26002 0.99006 0.89383 0.93697 1.74454 0.88387 1.26623 1.16567 1.50235 1.03817 1.05582 1.70071 1.21345 0.86782 0.88933 0.98457 1.22009 1.04082 0.99314 0.94734 1.22048 1.04098 0.99439 0.95114 1.21796 0.91858 0.83456 0.74634 1.90649 1.32859 1.66948 1.50551 1.21970 0.91689 0.97901 1.04507 0.85384 1.18581 0.97806 0.92276 0.88312 1.21519 1.24389 1.05851 1.05227 0.93075 1.25754 0.96814 1.01450 0.94957 1.70046 1.39875 1.37608 1.09143 0.85541 0.78866 0.79639 0.77901 1.19850 1.20796 1.19109 0.88840 0.87547 0.88079 0.89827 0.88363 0.93551 0.91255 0.94796 0.88129 0.91290 0.94238 0.99769 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.49 71.24 0.75 -0.82 16 2 C 0.11 3.67 6.93 46.83 0.32 4.00 16 3 N -0.25 -8.65 11.78 -40.85 -0.48 -9.13 16 4 N -0.48 -18.04 3.25 -440.65 -1.43 -19.48 16 5 C 0.15 4.41 3.61 44.99 0.16 4.57 16 6 C -0.14 -3.27 9.41 71.98 0.68 -2.59 16 7 C -0.15 -3.86 9.41 71.98 0.68 -3.19 16 8 C 0.49 22.83 7.61 87.89 0.67 23.50 16 9 O -0.54 -28.75 16.58 -3.07 -0.05 -28.80 16 10 C -0.14 -5.81 2.98 -11.74 -0.03 -5.84 16 11 H 0.13 5.14 8.14 -2.39 -0.02 5.12 16 12 C 0.07 3.54 4.50 29.85 0.13 3.68 16 13 C -0.53 -31.19 8.39 25.60 0.21 -30.98 16 14 H 0.05 3.09 7.24 -2.91 -0.02 3.07 16 15 C 0.01 0.50 5.46 84.66 0.46 0.96 16 16 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 17 Si 0.96 46.46 29.54 68.60 2.03 48.49 16 18 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 22 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.08 2.73 7.69 -2.39 -0.02 2.71 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 32 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -72.92 285.46 5.46 -67.46 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.08 Total: 3.75 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 4.03 Total: -6.71 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.63 Total: -84.19 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.92 5.46 -67.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601935460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.683 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds