Wall clock time and date at job start Thu Apr 9 2020 11:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47110 * 90.00207 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00199 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00240 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.41382 * 126.80097 * 94.71291 * 15 14 13 17 17 C 1.35454 * 103.98569 * 179.89205 * 16 15 14 18 18 O 1.34042 * 106.44391 * 0.36301 * 17 16 15 19 19 N 1.20916 * 111.56818 * 359.75205 * 18 17 16 20 20 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 21 21 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 22 22 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 25 25 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 26 26 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 28 28 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 29 29 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 32 32 H 1.08004 * 128.00537 * 0.02562 * 16 15 14 33 33 H 1.08002 * 126.77602 * 180.10108 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 0.3293 -0.2566 5.6111 17 6 0.3056 0.6830 6.5865 18 8 1.3863 1.4532 6.3977 19 7 2.0353 1.0832 5.4470 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9562 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 0.7095 1.1616 -3.4845 27 1 3.1300 -0.7209 1.2495 28 1 1.6766 -1.7489 1.2494 29 1 1.8198 0.9437 2.4401 30 1 1.6586 -1.7220 3.6874 31 1 3.1116 -0.6939 3.6870 32 1 -0.3807 -1.0514 5.4359 33 1 -0.4394 0.7927 7.3607 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602020666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:55:58 Heat of formation + Delta-G solvation = 57.338995 kcal Electronic energy + Delta-G solvation = -15302.960862 eV Core-core repulsion = 12753.075107 eV Total energy + Delta-G solvation = -2549.885755 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.85253 -37.13137 -34.96213 -32.95489 -31.60940 -30.67630 -26.50992 -25.55813 -25.19308 -23.24602 -23.00589 -20.83520 -18.52018 -17.72202 -17.45064 -15.94100 -15.28418 -15.05326 -14.50127 -14.00738 -13.51312 -13.20841 -12.51237 -12.32689 -12.25136 -11.82452 -11.25923 -11.09166 -10.99608 -10.63878 -10.60862 -10.18177 -10.16031 -10.00738 -9.61177 -9.38814 -9.10140 -8.62726 -8.29013 -7.79472 -5.90834 -4.01468 1.55902 2.31093 3.31890 3.31963 3.38831 3.41658 4.25256 4.44985 4.62244 5.00670 5.21895 5.34682 5.38268 5.47762 5.74709 5.87831 6.10251 6.28737 6.36711 6.70605 6.88609 7.07079 7.16885 7.37126 7.44454 7.66563 7.75921 7.82071 7.88336 8.20404 8.33905 8.34569 8.55313 8.99784 9.63538 11.09805 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.065929 B = 0.005368 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.600327 B = 5215.050536 C = 5279.667594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.069 3.931 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.680 5.680 14 C 0.132 3.868 15 C 0.029 3.971 16 C -0.216 4.216 17 C -0.071 4.071 18 O 0.095 5.905 19 N -0.366 5.366 20 H 0.019 0.981 21 H 0.074 0.926 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.084 0.916 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.341 0.659 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.171 0.829 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -1.473 14.701 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.314 5.314 14 C 0.002 3.998 15 C -0.130 4.130 16 C -0.238 4.238 17 C -0.153 4.153 18 O 0.029 5.971 19 N -0.071 5.071 20 H 0.038 0.962 21 H 0.093 0.907 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.188 0.812 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -1.228 -0.956 14.306 14.390 hybrid contribution 0.486 -0.873 -0.832 1.300 sum -0.742 -1.829 13.474 13.618 Atomic orbital electron populations 1.21645 0.97358 0.98595 1.00099 1.18101 0.93252 0.91998 0.89839 1.21844 0.97796 0.99157 1.00311 1.21093 1.31171 1.11882 0.90419 0.92938 1.24888 0.95024 0.94954 0.98716 1.69837 1.36818 1.22745 1.22935 0.86643 0.79181 0.79433 0.82978 1.20778 1.21324 1.20099 1.22209 0.95743 0.97899 0.89461 1.60671 1.63472 1.06740 1.00491 1.20236 0.96986 0.96990 0.85550 1.23721 0.94638 0.94983 0.99692 1.22745 1.00204 1.03755 0.97070 1.25970 0.93351 0.93445 1.02517 1.84819 1.29154 1.46185 1.36942 1.73841 1.18473 1.14600 1.00156 0.96188 0.90688 0.96234 0.96133 0.89732 0.97127 0.93169 0.96568 0.92225 0.83938 0.89205 0.94107 0.81169 0.76963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.13 -3.24 7.92 37.16 0.29 -2.95 16 4 C -0.51 -13.71 8.01 -34.44 -0.28 -13.98 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.67 9.35 55.43 0.52 -24.15 16 8 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.07 1.58 4.59 -3.82 -0.02 1.56 16 13 N -0.68 -12.68 5.70 -115.05 -0.66 -13.34 16 14 C 0.13 2.06 6.27 -4.97 -0.03 2.03 16 15 C 0.03 0.43 6.84 -82.10 -0.56 -0.13 16 16 C -0.22 -2.52 11.12 -39.38 -0.44 -2.96 16 17 C -0.07 -0.69 12.30 29.74 0.37 -0.33 16 18 O 0.10 1.24 11.20 17.17 0.19 1.43 16 19 N -0.37 -5.71 12.07 33.42 0.40 -5.31 16 20 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 21 H 0.07 2.02 6.07 -51.93 -0.32 1.71 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.34 6.65 6.76 -39.29 -0.27 6.38 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -29.26 274.14 -5.53 -34.79 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.56 Total: 2.42 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.54 Total: -16.12 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.27 Total: -42.80 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.26 -5.53 -34.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602020666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.125 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds