Wall clock time and date at job start Thu Apr 9 2020 11:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34355 * 126.82390 * 2 1 4 4 N 1.20895 * 111.61209 * 179.97438 * 3 2 1 5 5 C 1.30184 * 111.74211 * 359.97438 * 4 3 2 6 6 C 1.35832 * 126.81823 * 179.68324 * 2 1 3 7 7 N 1.40717 * 128.05003 * 359.97438 * 6 2 1 8 8 C 1.46504 * 119.99708 * 180.02562 * 7 6 2 9 9 C 1.52992 * 109.47135 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47229 * 305.00173 * 9 8 7 11 11 C 1.53007 * 109.47417 * 65.00079 * 9 8 7 12 12 C 1.53000 * 109.47496 * 185.00357 * 9 8 7 13 13 C 1.50693 * 109.47359 * 175.00157 * 12 9 8 14 14 H 1.07993 * 120.00220 * 359.97438 * 13 12 9 15 15 C 1.37881 * 120.00051 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99745 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47038 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47038 * 119.99443 * 17 15 13 20 20 H 1.48495 * 109.46985 * 239.99463 * 17 15 13 21 21 H 1.09001 * 109.46953 * 0.02595 * 1 2 3 22 22 H 1.09000 * 109.47318 * 120.02193 * 1 2 3 23 23 H 1.09000 * 109.47161 * 240.02823 * 1 2 3 24 24 H 1.07996 * 126.80575 * 180.02562 * 5 4 3 25 25 H 0.96998 * 120.00027 * 0.02562 * 7 6 2 26 26 H 1.09005 * 109.47279 * 300.00802 * 8 7 6 27 27 H 1.09002 * 109.46901 * 60.00776 * 8 7 6 28 28 H 1.08997 * 109.46958 * 300.00332 * 11 9 8 29 29 H 1.09004 * 109.46446 * 59.99958 * 11 9 8 30 30 H 1.08993 * 109.47182 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47051 * 295.00160 * 12 9 8 32 32 H 1.09007 * 109.46979 * 54.99344 * 12 9 8 33 33 H 0.96996 * 119.99703 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3123 1.0755 0.0000 4 7 3.4789 0.7583 0.0005 5 6 3.6270 -0.5351 0.0014 6 6 2.3211 -1.0874 0.0060 7 7 1.9537 -2.4457 0.0140 8 6 2.9874 -3.4840 0.0202 9 6 2.3249 -4.8630 0.0277 10 1 1.6359 -4.9306 0.8696 11 6 1.5550 -5.0662 -1.2789 12 6 3.3993 -5.9443 0.1600 13 6 2.7408 -7.2934 0.2907 14 1 1.6638 -7.3719 0.2809 15 6 3.5134 -8.4276 0.4240 16 7 4.8251 -8.3321 0.4364 17 14 2.6972 -10.1000 0.5868 18 1 1.2218 -9.9369 0.5448 19 1 3.1311 -10.9737 -0.5329 20 1 3.0899 -10.7188 1.8783 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5134 0.8902 24 1 4.5596 -1.0796 0.0024 25 1 1.0162 -2.6946 0.0154 26 1 3.6080 -3.3841 -0.8703 27 1 3.6077 -3.3737 0.9097 28 1 0.7896 -4.2959 -1.3731 29 1 2.2441 -4.9986 -2.1208 30 1 1.0835 -6.0488 -1.2737 31 1 4.0353 -5.9347 -0.7252 32 1 4.0051 -5.7482 1.0447 33 1 5.3686 -9.1300 0.5297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602598692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:02 Heat of formation + Delta-G solvation = 40.192676 kcal Electronic energy + Delta-G solvation = -14959.077681 eV Core-core repulsion = 12408.448406 eV Total energy + Delta-G solvation = -2550.629275 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.62235 -37.28958 -34.79179 -32.90657 -32.57918 -30.99929 -27.54495 -26.88377 -25.88423 -23.27969 -21.84919 -21.33927 -19.19191 -17.41107 -17.17173 -16.49746 -15.97203 -14.80825 -14.49012 -14.41783 -13.86658 -13.27779 -13.14859 -12.85578 -12.54901 -12.33541 -12.13599 -11.63092 -11.13636 -11.07349 -10.95853 -10.64390 -10.44003 -10.40249 -9.90790 -9.66200 -9.36761 -9.08951 -8.41571 -7.40855 -6.05932 -4.07964 1.66604 2.59139 3.13495 3.27025 3.35120 3.38117 3.79324 4.41224 4.67115 4.70261 5.02204 5.30228 5.41067 5.41235 5.50934 5.59558 5.63022 5.86122 5.93237 6.01767 6.14585 6.31662 6.36804 6.76910 6.94373 6.98330 7.34905 7.57318 7.70283 7.84876 7.92565 8.34651 8.44572 8.97976 9.56197 11.05527 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058550 B = 0.004871 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.109709 B = 5746.744875 C = 6087.102962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.147 4.147 3 O 0.102 5.898 4 N -0.355 5.355 5 C -0.045 4.045 6 C 0.106 3.894 7 N -0.720 5.720 8 C 0.132 3.868 9 C -0.095 4.095 10 H 0.063 0.937 11 C -0.132 4.132 12 C 0.029 3.971 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.187 0.813 25 H 0.402 0.598 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 13.111 -1.347 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.217 4.217 3 O 0.032 5.968 4 N -0.056 5.056 5 C -0.226 4.226 6 C 0.000 4.000 7 N -0.356 5.356 8 C 0.009 3.991 9 C -0.114 4.114 10 H 0.081 0.919 11 C -0.189 4.189 12 C -0.008 4.008 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.204 0.796 25 H 0.238 0.762 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.434 13.931 -1.335 15.403 hybrid contribution -0.806 -2.004 0.107 2.163 sum -7.241 11.927 -1.228 14.007 Atomic orbital electron populations 1.20010 0.84652 1.03694 1.02856 1.23224 0.95338 0.84891 1.18199 1.84721 1.10994 1.32152 1.68917 1.73720 0.97967 1.16279 1.17662 1.24583 0.98937 0.90313 1.08731 1.18533 0.92210 0.87136 1.02130 1.44150 1.08936 0.99223 1.83268 1.21618 0.89986 0.87030 1.00448 1.21432 0.99480 0.92805 0.97679 0.91882 1.21723 0.98951 1.00932 0.97322 1.19090 0.92741 0.91613 0.97370 1.21217 0.92981 0.91449 1.49810 0.92469 1.25018 0.94808 0.99235 0.95385 1.69970 1.03890 1.29028 1.50525 0.86558 0.79622 0.84288 0.77670 1.19752 1.21028 1.21036 0.90477 0.90476 0.90460 0.79598 0.76208 0.92810 0.92737 0.95079 0.93462 0.91707 0.96280 0.96423 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.46 10.38 36.01 0.37 -0.09 16 2 C -0.15 -1.85 7.52 -35.17 -0.26 -2.11 16 3 O 0.10 1.44 11.21 16.34 0.18 1.62 16 4 N -0.36 -5.41 12.06 30.50 0.37 -5.04 16 5 C -0.05 -0.66 11.61 -16.89 -0.20 -0.85 16 6 C 0.11 1.49 7.14 -83.28 -0.60 0.90 16 7 N -0.72 -10.01 5.53 -58.34 -0.32 -10.33 16 8 C 0.13 2.13 5.25 -4.04 -0.02 2.11 16 9 C -0.10 -1.77 2.37 -90.62 -0.22 -1.98 16 10 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.13 -2.27 8.88 37.16 0.33 -1.94 16 12 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 13 C -0.52 -13.83 8.41 -34.44 -0.29 -14.12 16 14 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 25 H 0.40 5.02 7.71 -40.82 -0.31 4.71 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.21 6.95 -51.93 -0.36 0.85 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 282.94 15.07 4.26 4.26 Total: -1.00 -29.51 282.94 -5.67 -35.19 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.78 Total: -0.26 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.10 Total: -16.04 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.78 Total: -40.83 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.18 Total: 1.62 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.51 -5.67 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602598692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.378 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds