Wall clock time and date at job start Thu Apr 9 2020 11:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34355 * 126.82390 * 2 1 4 4 N 1.20895 * 111.61209 * 179.97438 * 3 2 1 5 5 C 1.30184 * 111.74211 * 359.97438 * 4 3 2 6 6 C 1.35832 * 126.81823 * 179.68324 * 2 1 3 7 7 N 1.40717 * 128.05003 * 359.97438 * 6 2 1 8 8 C 1.46504 * 119.99708 * 180.02562 * 7 6 2 9 9 C 1.52992 * 109.47135 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.47229 * 305.00173 * 9 8 7 11 11 C 1.53007 * 109.47417 * 65.00079 * 9 8 7 12 12 C 1.53000 * 109.47496 * 185.00357 * 9 8 7 13 13 C 1.50693 * 109.47359 * 175.00157 * 12 9 8 14 14 H 1.07993 * 120.00220 * 359.97438 * 13 12 9 15 15 C 1.37881 * 120.00051 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99745 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47038 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47038 * 119.99443 * 17 15 13 20 20 H 1.48495 * 109.46985 * 239.99463 * 17 15 13 21 21 H 1.09001 * 109.46953 * 0.02595 * 1 2 3 22 22 H 1.09000 * 109.47318 * 120.02193 * 1 2 3 23 23 H 1.09000 * 109.47161 * 240.02823 * 1 2 3 24 24 H 1.07996 * 126.80575 * 180.02562 * 5 4 3 25 25 H 0.96998 * 120.00027 * 0.02562 * 7 6 2 26 26 H 1.09005 * 109.47279 * 300.00802 * 8 7 6 27 27 H 1.09002 * 109.46901 * 60.00776 * 8 7 6 28 28 H 1.08997 * 109.46958 * 300.00332 * 11 9 8 29 29 H 1.09004 * 109.46446 * 59.99958 * 11 9 8 30 30 H 1.08993 * 109.47182 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47051 * 295.00160 * 12 9 8 32 32 H 1.09007 * 109.46979 * 54.99344 * 12 9 8 33 33 H 0.96996 * 119.99703 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3123 1.0755 0.0000 4 7 3.4789 0.7583 0.0005 5 6 3.6270 -0.5351 0.0014 6 6 2.3211 -1.0874 0.0060 7 7 1.9537 -2.4457 0.0140 8 6 2.9874 -3.4840 0.0202 9 6 2.3249 -4.8630 0.0277 10 1 1.6359 -4.9306 0.8696 11 6 1.5550 -5.0662 -1.2789 12 6 3.3993 -5.9443 0.1600 13 6 2.7408 -7.2934 0.2907 14 1 1.6638 -7.3719 0.2809 15 6 3.5134 -8.4276 0.4240 16 7 4.8251 -8.3321 0.4364 17 14 2.6972 -10.1000 0.5868 18 1 1.2218 -9.9369 0.5448 19 1 3.1311 -10.9737 -0.5329 20 1 3.0899 -10.7188 1.8783 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3634 -0.5142 -0.8898 23 1 -0.3633 -0.5134 0.8902 24 1 4.5596 -1.0796 0.0024 25 1 1.0162 -2.6946 0.0154 26 1 3.6080 -3.3841 -0.8703 27 1 3.6077 -3.3737 0.9097 28 1 0.7896 -4.2959 -1.3731 29 1 2.2441 -4.9986 -2.1208 30 1 1.0835 -6.0488 -1.2737 31 1 4.0353 -5.9347 -0.7252 32 1 4.0051 -5.7482 1.0447 33 1 5.3686 -9.1300 0.5297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602598692.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:02 Heat of formation + Delta-G solvation = 22.237740 kcal Electronic energy + Delta-G solvation = -14959.856266 eV Core-core repulsion = 12408.448406 eV Total energy + Delta-G solvation = -2551.407860 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.72171 -38.62210 -36.23650 -34.40728 -33.91939 -32.30858 -28.96670 -28.22106 -27.23871 -24.99394 -23.16671 -22.42009 -20.71450 -18.58120 -18.51029 -18.17518 -17.14371 -16.53865 -16.05250 -15.68907 -15.04682 -14.43072 -14.38505 -14.02008 -13.83322 -13.76707 -13.33823 -13.16344 -12.80560 -12.71782 -12.26532 -12.12780 -12.12722 -11.91606 -11.47123 -11.16270 -11.01825 -10.74610 -10.53823 -8.49266 -8.17531 -6.26315 0.62646 1.41074 1.42376 1.49645 1.54215 2.08966 2.42738 2.73242 3.17151 3.62133 3.70198 3.99228 4.13748 4.20195 4.40530 4.59622 4.76975 4.78724 4.81714 4.86232 4.94859 4.99484 5.22196 5.28992 5.34172 5.48200 5.53319 5.78020 5.87510 6.13647 6.30000 6.82288 6.90438 7.38694 7.42432 8.94744 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058550 B = 0.004871 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.109709 B = 5746.744875 C = 6087.102962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.127 4.127 3 O 0.099 5.901 4 N -0.378 5.378 5 C -0.057 4.057 6 C 0.083 3.917 7 N -0.713 5.713 8 C 0.148 3.852 9 C -0.083 4.083 10 H 0.066 0.934 11 C -0.125 4.125 12 C 0.032 3.968 13 C -0.527 4.527 14 H 0.065 0.935 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.959 3.041 18 H -0.260 1.260 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.095 0.905 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.192 0.808 25 H 0.411 0.589 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.048 0.952 31 H -0.006 1.006 32 H -0.009 1.009 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 13.505 -1.487 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.197 4.197 3 O 0.030 5.970 4 N -0.080 5.080 5 C -0.237 4.237 6 C -0.022 4.022 7 N -0.352 5.352 8 C 0.023 3.977 9 C -0.102 4.102 10 H 0.085 0.915 11 C -0.183 4.183 12 C -0.006 4.006 13 C -0.565 4.565 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.113 0.887 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.209 0.791 25 H 0.249 0.751 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.012 0.988 32 H 0.009 0.991 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.783 14.350 -1.477 16.890 hybrid contribution -0.098 -2.047 0.155 2.056 sum -8.881 12.303 -1.322 15.231 Atomic orbital electron populations 1.20271 0.81498 1.05437 1.04211 1.23986 0.96870 0.83865 1.14973 1.84708 1.10909 1.32763 1.68595 1.73716 0.98638 1.16617 1.19047 1.24831 0.99802 0.90417 1.08616 1.18609 0.92328 0.87376 1.03906 1.43793 1.08693 0.98678 1.84013 1.21232 0.90128 0.86369 0.99933 1.21181 0.97878 0.92357 0.98780 0.91545 1.21643 0.99363 1.01294 0.95955 1.18983 0.93665 0.93059 0.94868 1.21656 0.93477 0.92595 1.48773 0.91712 1.25926 0.95333 1.03407 0.95233 1.70104 1.05477 1.30113 1.51950 0.85478 0.79202 0.79361 0.77502 1.18331 1.20769 1.20824 0.88653 0.88914 0.89048 0.79056 0.75099 0.93211 0.93645 0.91436 0.94138 0.93277 0.98797 0.99110 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.38 71.24 0.74 -0.02 16 2 C -0.13 -2.89 7.52 25.13 0.19 -2.70 16 3 O 0.10 2.64 11.21 68.64 0.77 3.41 16 4 N -0.38 -11.24 12.06 -58.63 -0.71 -11.95 16 5 C -0.06 -1.63 11.61 85.82 1.00 -0.63 16 6 C 0.08 2.20 7.14 38.03 0.27 2.47 16 7 N -0.71 -18.43 5.53 -338.50 -1.87 -20.30 16 8 C 0.15 4.65 5.25 86.38 0.45 5.10 16 9 C -0.08 -3.03 2.37 -10.79 -0.03 -3.06 16 10 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.13 -4.11 8.88 71.98 0.64 -3.47 16 12 C 0.03 1.58 4.45 29.85 0.13 1.71 16 13 C -0.53 -28.34 8.41 25.60 0.22 -28.12 16 14 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 16 N -0.94 -55.89 13.29 21.45 0.28 -55.60 16 17 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 25 H 0.41 9.01 7.71 -92.71 -0.71 8.30 16 26 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.72 7.18 -2.39 -0.02 1.70 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.76 6.95 -2.39 -0.02 1.74 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -63.66 282.94 4.96 -58.70 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.38 Total: 8.92 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.07 Total: -28.35 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.29 Total: -87.85 kcal Atomic # 8 Polarization: 2.64 SS G_CDS: 0.77 Total: 3.41 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.66 4.96 -58.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602598692.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.941 kcal (2) G-P(sol) polarization free energy of solvation -63.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds