Wall clock time and date at job start Thu Apr 9 2020 11:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47262 * 2 1 4 4 C 1.52996 * 109.46840 * 120.00000 * 2 1 3 5 5 C 1.50703 * 109.47343 * 295.00056 * 4 2 1 6 6 H 1.07997 * 119.99829 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00190 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00154 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47431 * 89.99740 * 9 7 5 11 11 H 1.48492 * 109.47201 * 210.00404 * 9 7 5 12 12 H 1.48503 * 109.46831 * 329.99961 * 9 7 5 13 13 C 1.53003 * 109.47203 * 239.99872 * 2 1 3 14 14 N 1.46903 * 109.47090 * 65.00075 * 13 2 1 15 15 C 1.46893 * 110.99924 * 179.97438 * 14 13 2 16 16 C 1.50706 * 109.47176 * 179.97438 * 15 14 13 17 17 C 1.35448 * 126.77427 * 90.00349 * 16 15 14 18 18 C 1.41379 * 103.98773 * 179.97438 * 17 16 15 19 19 N 1.30177 * 106.39153 * 0.02562 * 18 17 16 20 20 O 1.20923 * 111.60431 * 359.72194 * 19 18 17 21 21 H 1.09001 * 109.46807 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47273 * 300.00330 * 1 2 3 23 23 H 1.08999 * 109.46977 * 60.00062 * 1 2 3 24 24 H 1.09003 * 109.47123 * 55.00218 * 4 2 1 25 25 H 1.09001 * 109.47187 * 175.00039 * 4 2 1 26 26 H 0.96994 * 120.00210 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47042 * 305.00375 * 13 2 1 28 28 H 1.09003 * 109.46902 * 184.99606 * 13 2 1 29 29 H 1.00904 * 110.99923 * 56.04649 * 14 13 2 30 30 H 1.09001 * 109.46739 * 60.00281 * 15 14 13 31 31 H 1.09000 * 109.47767 * 300.00540 * 15 14 13 32 32 H 1.07999 * 128.00958 * 359.97438 * 17 16 15 33 33 H 1.07997 * 126.80377 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0799 0.9741 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6456 0.2777 4.7994 9 14 2.9646 -1.9876 3.9028 10 1 4.4179 -1.6831 3.8785 11 1 2.6173 -2.6418 5.1898 12 1 2.6310 -2.8987 2.7786 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6265 -3.6671 16 6 1.7088 0.1786 -4.8709 17 6 2.4110 1.1734 -5.4640 18 6 1.5829 1.5859 -6.5331 19 7 0.5180 0.8389 -6.4822 20 8 0.5721 0.0481 -5.5689 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6053 -1.7198 1.2951 25 1 3.1262 -0.7995 1.2056 26 1 1.8928 -0.0452 5.6799 27 1 1.6054 -1.7198 -1.2952 28 1 3.1264 -0.7994 -1.2056 29 1 1.9882 0.9873 -2.3967 30 1 1.6921 -1.6246 -3.7300 31 1 3.2127 -0.7039 -3.6400 32 1 3.3794 1.5616 -5.1849 33 1 1.7920 2.3666 -7.2494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602606868.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:06 Heat of formation + Delta-G solvation = 27.593042 kcal Electronic energy + Delta-G solvation = -14780.130419 eV Core-core repulsion = 12228.954782 eV Total energy + Delta-G solvation = -2551.175637 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.83630 -38.50448 -36.06652 -34.73745 -34.19920 -32.39980 -29.47894 -27.66302 -25.69349 -24.39400 -23.61375 -22.25364 -20.79877 -18.94768 -18.48802 -18.25815 -16.54184 -16.44697 -16.06486 -15.57253 -15.18343 -14.94941 -14.65171 -14.27279 -13.96952 -13.53595 -13.14990 -12.84841 -12.81282 -12.47643 -12.21177 -12.07524 -11.76875 -11.42134 -11.40136 -11.23406 -11.03423 -10.70521 -10.42778 -9.35531 -8.23219 -6.25819 0.49894 1.38403 1.38681 1.41360 1.52784 2.18006 2.40727 3.12404 3.30529 3.52080 3.72140 4.10645 4.17160 4.29805 4.33215 4.50626 4.52161 4.76613 4.80721 4.89895 4.94845 4.98333 5.13985 5.18510 5.43004 5.43111 5.57925 5.73626 5.76144 6.00535 6.36763 6.41885 6.82640 7.31515 7.37893 8.93750 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.064052 B = 0.004521 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.040091 B = 6191.480302 C = 6343.901100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 H 0.051 0.949 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.032 0.968 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.243 1.243 13 C 0.076 3.924 14 N -0.692 5.692 15 C 0.137 3.863 16 C -0.024 4.024 17 C -0.228 4.228 18 C -0.010 4.010 19 N -0.404 5.404 20 O 0.078 5.922 21 H 0.044 0.956 22 H 0.024 0.976 23 H 0.061 0.939 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.264 0.736 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.347 0.653 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.198 0.802 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -2.078 -20.874 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.197 4.197 8 N -0.598 5.598 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.167 1.167 13 C -0.052 4.052 14 N -0.325 5.325 15 C 0.008 3.992 16 C -0.088 4.088 17 C -0.250 4.250 18 C -0.188 4.188 19 N -0.110 5.110 20 O 0.015 5.985 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.166 0.834 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.215 0.785 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.472 -2.463 -21.470 21.888 hybrid contribution 1.742 0.287 1.086 2.072 sum 5.214 -2.176 -20.384 21.153 Atomic orbital electron populations 1.21518 0.95503 1.00711 0.99828 1.20897 0.96147 0.98666 0.93299 0.93058 1.19575 0.95995 0.95917 0.93018 1.21489 1.34231 1.08625 0.91421 0.94994 1.26040 0.97141 1.01019 0.95501 1.70083 1.49276 1.41703 0.98745 0.85662 0.79136 0.79824 0.78030 1.19181 1.21549 1.16670 1.21938 0.98045 0.97473 0.87774 1.60391 1.64905 1.06362 1.00846 1.20428 0.99519 0.96617 0.82619 1.24776 0.86659 0.99950 0.97389 1.23004 1.04567 0.99579 0.97842 1.25639 0.90162 1.01766 1.01261 1.73905 1.24196 1.05271 1.07630 1.84798 1.36807 1.45355 1.31502 0.93650 0.95686 0.91989 0.96195 0.96204 0.92758 0.90476 0.93847 0.83441 0.88178 0.89165 0.78454 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -2.58 2.48 -10.79 -0.03 -2.61 16 3 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 5 C -0.52 -29.45 8.96 25.60 0.23 -29.22 16 6 H 0.03 2.01 7.30 -2.91 -0.02 1.99 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.96 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 C 0.08 2.01 5.07 86.30 0.44 2.45 16 14 N -0.69 -15.56 5.94 -517.93 -3.08 -18.63 16 15 C 0.14 2.33 6.25 85.56 0.53 2.87 16 16 C -0.02 -0.46 7.00 25.04 0.18 -0.28 16 17 C -0.23 -3.59 11.09 22.40 0.25 -3.34 16 18 C -0.01 -0.19 12.17 85.71 1.04 0.86 16 19 N -0.40 -10.02 12.07 -59.26 -0.72 -10.74 16 20 O 0.08 1.96 11.20 71.71 0.80 2.76 16 21 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.02 1.07 6.95 -2.39 -0.02 1.05 16 23 H 0.06 2.07 7.75 -2.39 -0.02 2.05 16 24 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 25 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.35 7.44 8.72 -89.69 -0.78 6.66 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.22 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -68.85 281.07 3.30 -65.55 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.26 Total: 8.39 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.85 Total: -32.86 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.49 Total: -89.38 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.80 Total: 2.76 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -68.85 3.30 -65.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602606868.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.141 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds