Wall clock time and date at job start Thu Apr 9 2020 11:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47118 * 2 1 4 4 N 1.30834 * 125.96516 * 305.02863 * 3 2 1 5 5 C 1.33233 * 109.82996 * 179.73851 * 4 3 2 6 6 C 1.50703 * 125.52686 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47098 * 89.99575 * 6 5 4 8 8 C 1.46900 * 111.00105 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47110 * 35.00372 * 8 7 6 10 10 C 1.52998 * 109.47409 * 275.00096 * 8 7 6 11 11 C 1.50703 * 109.47318 * 154.99930 * 8 7 6 12 12 H 1.08001 * 119.99852 * 0.02562 * 11 8 7 13 13 C 1.37868 * 120.00280 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00288 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.46918 * 59.99666 * 15 13 11 17 17 H 1.48496 * 109.47144 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46637 * 299.99759 * 15 13 11 19 19 N 1.30708 * 108.95078 * 359.97438 * 5 4 3 20 20 N 1.34429 * 125.95883 * 124.71887 * 3 2 1 21 21 H 0.97003 * 126.82753 * 0.26347 * 20 3 2 22 22 H 1.08998 * 109.47754 * 59.99659 * 1 2 3 23 23 H 1.09008 * 109.47172 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47149 * 299.99350 * 1 2 3 25 25 H 1.09006 * 109.46729 * 240.00462 * 2 1 3 26 26 H 1.08996 * 109.47476 * 120.00790 * 2 1 3 27 27 H 1.08993 * 109.47694 * 209.99452 * 6 5 4 28 28 H 1.09000 * 109.46947 * 329.99963 * 6 5 4 29 29 H 1.00906 * 111.00325 * 303.95491 * 7 6 5 30 30 H 1.09003 * 109.46963 * 60.00154 * 10 8 7 31 31 H 1.09002 * 109.47126 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47210 * 300.00215 * 10 8 7 33 33 H 0.97002 * 120.00566 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7153 2.3478 -0.8671 5 6 2.3379 3.4852 -0.5607 6 6 2.2242 4.7791 -1.3248 7 7 1.1144 5.5732 -0.7807 8 6 0.9736 6.8449 -1.5024 9 1 1.2188 6.6950 -2.5539 10 6 1.9241 7.8813 -0.8998 11 6 -0.4461 7.3359 -1.3828 12 1 -1.1712 6.7609 -0.8260 13 6 -0.8194 8.5190 -1.9842 14 7 0.0636 9.2194 -2.6619 15 14 -2.5791 9.1279 -1.8354 16 1 -2.9125 9.3328 -0.4029 17 1 -2.7215 10.4134 -2.5651 18 1 -3.5021 8.1218 -2.4195 19 7 3.0625 3.2971 0.5108 20 7 2.8797 1.9584 0.8944 21 1 3.2843 1.5109 1.6540 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1535 5.3405 -1.2292 28 1 2.0358 4.5645 -2.3767 29 1 0.2521 5.0494 -0.7986 30 1 2.9510 7.5262 -0.9863 31 1 1.8199 8.8248 -1.4356 32 1 1.6789 8.0312 0.1517 33 1 -0.1989 10.0520 -3.0848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:08 Heat of formation + Delta-G solvation = 73.594721 kcal Electronic energy + Delta-G solvation = -14975.895805 eV Core-core repulsion = 12459.007702 eV Total energy + Delta-G solvation = -2516.888103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.95310 -36.03381 -34.30769 -32.94518 -31.94790 -30.14214 -28.54288 -25.50720 -24.62235 -24.32835 -21.00221 -20.07805 -19.69968 -17.76879 -16.48734 -15.67127 -14.99030 -14.76302 -14.36549 -13.88940 -13.52049 -13.29259 -12.86457 -12.31034 -12.04924 -11.80790 -11.64045 -11.28902 -11.11863 -10.83989 -10.75648 -10.29324 -10.13753 -10.06451 -9.80353 -9.79597 -9.28100 -8.79074 -8.42971 -7.26544 -5.98247 -4.04389 1.75406 2.75151 3.08274 3.35349 3.39147 3.42536 4.04957 4.44829 4.60083 4.83504 4.96867 5.17584 5.32824 5.34483 5.58388 5.62495 5.76942 6.08586 6.14288 6.17306 6.48929 6.66460 6.92719 7.15094 7.19787 7.26267 7.52667 7.81919 7.93135 8.29047 8.34022 8.40964 8.67915 9.04699 9.61023 11.08184 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.005727 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.908675 B = 4887.763991 C = 5425.974408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.274 3.726 4 N -0.533 5.533 5 C 0.247 3.753 6 C 0.150 3.850 7 N -0.681 5.681 8 C 0.213 3.787 9 H 0.005 0.995 10 C -0.125 4.125 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.303 5.303 20 N -0.490 5.490 21 H 0.435 0.565 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.335 0.665 30 H 0.005 0.995 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -16.980 4.822 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.005 4.005 4 N -0.262 5.262 5 C -0.036 4.036 6 C 0.017 3.983 7 N -0.313 5.313 8 C 0.106 3.894 9 H 0.022 0.978 10 C -0.183 4.183 11 C -0.556 4.556 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.131 5.131 20 N -0.208 5.208 21 H 0.279 0.721 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.338 -15.939 5.212 17.322 hybrid contribution -1.013 -0.382 -0.131 1.091 sum 3.325 -16.321 5.081 17.414 Atomic orbital electron populations 1.21694 0.92783 1.02192 1.03686 1.20103 0.97759 0.86321 1.03874 1.24367 0.91172 0.97400 0.87555 1.70336 1.27863 0.99712 1.28300 1.24498 0.91775 0.95301 0.91991 1.20199 0.98624 0.85588 0.93842 1.60748 1.06474 1.06230 1.57878 1.19137 0.95520 0.83939 0.90811 0.97752 1.21727 0.94767 1.01855 0.99993 1.21195 0.94502 1.06947 1.32935 0.92264 1.24900 0.97523 0.96489 0.95014 1.69888 1.33639 1.15149 1.34219 0.86567 0.84735 0.77925 0.78199 1.20250 1.21301 1.20309 1.78092 1.25927 0.92327 1.16773 1.48074 1.37838 1.09374 1.25545 0.72053 0.90809 0.91658 0.92480 0.88559 0.90025 0.89506 0.93167 0.84727 0.97563 0.90000 0.94912 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.87 37.15 0.37 -0.87 16 2 C -0.04 -0.33 6.56 -27.89 -0.18 -0.51 16 3 C 0.27 3.59 7.51 -155.69 -1.17 2.42 16 4 N -0.53 -9.15 11.16 -8.16 -0.09 -9.24 16 5 C 0.25 4.66 7.65 -156.86 -1.20 3.46 16 6 C 0.15 3.01 6.11 -4.97 -0.03 2.98 16 7 N -0.68 -15.66 6.29 -109.22 -0.69 -16.35 16 8 C 0.21 5.57 2.60 -68.86 -0.18 5.39 16 9 H 0.00 0.13 7.80 -51.93 -0.41 -0.27 16 10 C -0.13 -3.21 9.19 37.16 0.34 -2.87 16 11 C -0.52 -14.54 8.59 -34.44 -0.30 -14.84 16 12 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 13 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -25.73 11.32 55.43 0.63 -25.10 16 15 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.30 -5.39 12.80 32.42 0.41 -4.98 16 20 N -0.49 -6.38 7.45 32.62 0.24 -6.14 16 21 H 0.43 3.78 8.96 -182.33 -1.63 2.15 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 1.73 7.43 -51.93 -0.39 1.34 16 28 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 29 H 0.34 7.75 8.22 -39.29 -0.32 7.43 16 30 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 31 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -32.23 282.03 -8.65 -40.88 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.94 Total: 3.26 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.44 Total: -3.17 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.51 Total: -61.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.23 -8.65 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.473 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds