Wall clock time and date at job start Thu Apr 9 2020 11:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47118 * 2 1 4 4 N 1.30834 * 125.96516 * 305.02863 * 3 2 1 5 5 C 1.33233 * 109.82996 * 179.73851 * 4 3 2 6 6 C 1.50703 * 125.52686 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47098 * 89.99575 * 6 5 4 8 8 C 1.46900 * 111.00105 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.47110 * 35.00372 * 8 7 6 10 10 C 1.52998 * 109.47409 * 275.00096 * 8 7 6 11 11 C 1.50703 * 109.47318 * 154.99930 * 8 7 6 12 12 H 1.08001 * 119.99852 * 0.02562 * 11 8 7 13 13 C 1.37868 * 120.00280 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00288 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.46918 * 59.99666 * 15 13 11 17 17 H 1.48496 * 109.47144 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46637 * 299.99759 * 15 13 11 19 19 N 1.30708 * 108.95078 * 359.97438 * 5 4 3 20 20 N 1.34429 * 125.95883 * 124.71887 * 3 2 1 21 21 H 0.97003 * 126.82753 * 0.26347 * 20 3 2 22 22 H 1.08998 * 109.47754 * 59.99659 * 1 2 3 23 23 H 1.09008 * 109.47172 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47149 * 299.99350 * 1 2 3 25 25 H 1.09006 * 109.46729 * 240.00462 * 2 1 3 26 26 H 1.08996 * 109.47476 * 120.00790 * 2 1 3 27 27 H 1.08993 * 109.47694 * 209.99452 * 6 5 4 28 28 H 1.09000 * 109.46947 * 329.99963 * 6 5 4 29 29 H 1.00906 * 111.00325 * 303.95491 * 7 6 5 30 30 H 1.09003 * 109.46963 * 60.00154 * 10 8 7 31 31 H 1.09002 * 109.47126 * 179.97438 * 10 8 7 32 32 H 1.09001 * 109.47210 * 300.00215 * 10 8 7 33 33 H 0.97002 * 120.00566 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7153 2.3478 -0.8671 5 6 2.3379 3.4852 -0.5607 6 6 2.2242 4.7791 -1.3248 7 7 1.1144 5.5732 -0.7807 8 6 0.9736 6.8449 -1.5024 9 1 1.2188 6.6950 -2.5539 10 6 1.9241 7.8813 -0.8998 11 6 -0.4461 7.3359 -1.3828 12 1 -1.1712 6.7609 -0.8260 13 6 -0.8194 8.5190 -1.9842 14 7 0.0636 9.2194 -2.6619 15 14 -2.5791 9.1279 -1.8354 16 1 -2.9125 9.3328 -0.4029 17 1 -2.7215 10.4134 -2.5651 18 1 -3.5021 8.1218 -2.4195 19 7 3.0625 3.2971 0.5108 20 7 2.8797 1.9584 0.8944 21 1 3.2843 1.5109 1.6540 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8901 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.1535 5.3405 -1.2292 28 1 2.0358 4.5645 -2.3767 29 1 0.2521 5.0494 -0.7986 30 1 2.9510 7.5262 -0.9863 31 1 1.8199 8.8248 -1.4356 32 1 1.6789 8.0312 0.1517 33 1 -0.1989 10.0520 -3.0848 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:08 Heat of formation + Delta-G solvation = 50.408634 kcal Electronic energy + Delta-G solvation = -14976.901229 eV Core-core repulsion = 12459.007702 eV Total energy + Delta-G solvation = -2517.893527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.15662 -37.89261 -35.39019 -34.54547 -33.47007 -31.48626 -30.25556 -27.49879 -26.44483 -25.19212 -22.21408 -21.74813 -21.26349 -18.94418 -18.49169 -17.04703 -16.68393 -16.21788 -15.54532 -15.31681 -15.14539 -14.81173 -14.16598 -13.83536 -13.54403 -13.09284 -12.96645 -12.75959 -12.69739 -12.43794 -12.30420 -12.18853 -12.00571 -11.96339 -11.13092 -11.07150 -10.91576 -10.57273 -10.49114 -9.16461 -8.12436 -6.26739 0.58605 1.43755 1.46106 1.53721 1.72991 1.79102 2.43334 2.97820 3.16115 3.56719 3.70893 3.89658 4.28075 4.34116 4.52807 4.60086 4.73131 4.83561 5.01105 5.08451 5.10149 5.18518 5.27693 5.28729 5.44073 5.46961 5.65385 5.83311 6.19992 6.24118 6.39317 6.67235 6.92682 7.11673 7.42908 8.93361 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.037529 B = 0.005727 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.908675 B = 4887.763991 C = 5425.974408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C 0.287 3.713 4 N -0.567 5.567 5 C 0.230 3.770 6 C 0.155 3.845 7 N -0.678 5.678 8 C 0.217 3.783 9 H -0.021 1.021 10 C -0.113 4.113 11 C -0.540 4.540 12 H 0.056 0.944 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.271 1.271 19 N -0.329 5.329 20 N -0.474 5.474 21 H 0.455 0.545 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.333 0.667 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -18.863 5.797 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C 0.008 3.992 4 N -0.297 5.297 5 C -0.053 4.053 6 C 0.023 3.977 7 N -0.310 5.310 8 C 0.109 3.891 9 H -0.004 1.004 10 C -0.172 4.172 11 C -0.579 4.579 12 H 0.074 0.926 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.196 1.196 19 N -0.159 5.159 20 N -0.194 5.194 21 H 0.304 0.696 22 H 0.065 0.935 23 H 0.113 0.887 24 H 0.065 0.935 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.150 0.850 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.927 -17.858 6.216 19.313 hybrid contribution -0.829 0.079 -0.401 0.924 sum 3.098 -17.779 5.815 18.961 Atomic orbital electron populations 1.21684 0.93117 1.03577 1.01847 1.20437 0.97242 0.83271 1.06753 1.25279 0.89502 0.98547 0.85833 1.70292 1.29061 1.00054 1.30306 1.24079 0.93198 0.95325 0.92674 1.20035 0.97257 0.86386 0.93981 1.60651 1.07125 1.05739 1.57497 1.18962 0.94987 0.85490 0.89640 1.00386 1.21553 0.95776 1.00835 0.98995 1.21486 0.95427 1.07530 1.33408 0.92550 1.25712 1.01682 0.96514 0.94476 1.70007 1.35496 1.15403 1.34564 0.85515 0.79691 0.77528 0.78289 1.19801 1.20625 1.19581 1.77948 1.26296 0.95030 1.16632 1.47947 1.37551 1.07828 1.26049 0.69599 0.93495 0.88651 0.93489 0.86810 0.85887 0.89669 0.93472 0.85016 0.95764 0.91999 0.95522 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.87 71.98 0.71 -1.38 16 2 C -0.04 -0.47 6.56 29.84 0.20 -0.27 16 3 C 0.29 6.92 7.51 138.22 1.04 7.96 16 4 N -0.57 -19.15 11.16 -179.74 -2.01 -21.16 16 5 C 0.23 8.68 7.65 138.64 1.06 9.74 16 6 C 0.16 6.39 6.11 85.56 0.52 6.92 16 7 N -0.68 -31.85 6.29 -499.46 -3.14 -34.99 16 8 C 0.22 11.64 2.60 44.17 0.11 11.75 16 9 H -0.02 -1.24 7.80 -2.39 -0.02 -1.26 16 10 C -0.11 -5.90 9.19 71.98 0.66 -5.24 16 11 C -0.54 -30.80 8.59 25.60 0.22 -30.58 16 12 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 13 C 0.02 0.88 5.30 84.65 0.45 1.33 16 14 N -0.92 -53.49 11.32 21.44 0.24 -53.25 16 15 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 N -0.33 -11.48 12.80 -51.34 -0.66 -12.14 16 20 N -0.47 -11.32 7.45 -50.71 -0.38 -11.70 16 21 H 0.46 6.57 8.96 -213.09 -1.91 4.66 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 3.47 7.43 -2.39 -0.02 3.45 16 28 H 0.05 1.95 8.06 -2.39 -0.02 1.93 16 29 H 0.33 15.76 8.22 -89.69 -0.74 15.02 16 30 H 0.02 1.12 7.45 -2.39 -0.02 1.10 16 31 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -70.11 282.03 -0.46 -70.57 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -1.52 Total: 16.11 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 4.97 Total: 0.22 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -5.94 Total: -133.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.11 -0.46 -70.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.979 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds