Wall clock time and date at job start Thu Apr 9 2020 11:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35450 * 126.77982 * 2 1 4 4 C 1.41369 * 103.98586 * 180.09317 * 3 2 1 5 5 C 1.50704 * 126.80402 * 179.89126 * 4 3 2 6 6 N 1.46893 * 109.47295 * 94.70789 * 5 4 3 7 7 C 1.46901 * 111.00360 * 293.95434 * 6 5 4 8 8 C 1.46906 * 110.99932 * 170.00151 * 6 5 4 9 9 C 1.53002 * 109.47053 * 189.99865 * 8 6 5 10 10 C 1.50696 * 109.46999 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00355 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99521 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00556 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46997 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47364 * 120.00013 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00080 * 14 12 10 18 18 N 1.30180 * 106.39978 * 359.62665 * 4 3 2 19 19 O 1.20921 * 111.60064 * 0.23742 * 18 4 3 20 20 H 1.09000 * 109.47351 * 180.29964 * 1 2 3 21 21 H 1.08997 * 109.47232 * 300.30710 * 1 2 3 22 22 H 1.09007 * 109.47004 * 60.30300 * 1 2 3 23 23 H 1.08003 * 128.00234 * 359.95985 * 3 2 1 24 24 H 1.09004 * 109.46439 * 334.70775 * 5 4 3 25 25 H 1.08994 * 109.47235 * 214.71576 * 5 4 3 26 26 H 1.08995 * 109.47046 * 296.04847 * 7 6 5 27 27 H 1.09008 * 109.46903 * 56.04730 * 7 6 5 28 28 H 1.08999 * 109.47457 * 176.04446 * 7 6 5 29 29 H 1.08992 * 109.47459 * 309.99948 * 8 6 5 30 30 H 1.09004 * 109.47040 * 70.00098 * 8 6 5 31 31 H 1.09001 * 109.47142 * 300.00160 * 9 8 6 32 32 H 1.09004 * 109.47006 * 60.00213 * 9 8 6 33 33 H 0.96999 * 120.00022 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9211 1.2998 -0.0055 6 7 5.4038 1.4507 1.3737 7 6 4.5002 2.3035 2.1574 8 6 6.7755 1.9760 1.3968 9 6 7.3322 1.8858 2.8191 10 6 8.7395 2.4241 2.8428 11 1 9.1916 2.7940 1.9343 12 6 9.4502 2.4445 4.0241 13 7 8.8999 1.9936 5.1303 14 14 11.1944 3.1124 4.0536 15 1 11.5785 3.5540 2.6888 16 1 11.2673 4.2656 4.9864 17 1 12.1244 2.0480 4.5089 18 7 3.4763 -0.7565 0.0048 19 8 2.3095 -1.0737 0.0062 20 1 -0.3634 -1.0276 0.0054 21 1 -0.3633 0.5186 0.8872 22 1 -0.3633 0.5092 -0.8928 23 1 2.0345 2.1270 -0.0006 24 1 4.7632 2.2848 -0.4450 25 1 5.6608 0.7547 -0.5918 26 1 4.4962 3.3098 1.7388 27 1 3.4915 1.8918 2.1235 28 1 4.8424 2.3416 3.1916 29 1 7.4008 1.3891 0.7241 30 1 6.7714 3.0170 1.0736 31 1 6.7069 2.4728 3.4919 32 1 7.3363 0.8448 3.1424 33 1 9.3999 2.0076 5.9614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603845797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:13 Heat of formation + Delta-G solvation = 55.984488 kcal Electronic energy + Delta-G solvation = -14949.254120 eV Core-core repulsion = 12399.309629 eV Total energy + Delta-G solvation = -2549.944491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.82437 -37.43114 -34.19083 -33.38377 -32.72079 -29.72955 -27.86041 -27.48183 -25.49595 -23.22156 -22.63540 -20.02257 -19.62205 -17.56642 -17.12062 -16.41760 -15.06229 -14.82628 -14.61409 -14.34967 -13.80577 -13.60605 -13.45766 -12.76063 -12.62514 -12.26070 -12.13916 -11.70964 -11.20004 -11.11589 -10.92120 -10.83468 -10.53818 -10.09795 -9.84789 -9.42407 -9.24758 -9.09509 -8.32383 -7.78566 -5.98392 -4.00956 1.52989 2.31202 3.15956 3.32195 3.39485 3.43447 4.27656 4.39101 4.47777 4.69372 5.01380 5.13592 5.16360 5.28323 5.37534 5.48467 5.54447 5.74730 5.77251 5.84739 5.96142 6.11005 6.25160 6.40819 6.49895 6.94904 7.45203 7.50414 7.77838 7.90058 8.08926 8.42749 8.43916 9.06466 9.62655 11.13103 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.070621 B = 0.004614 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.385844 B = 6066.591422 C = 6116.867795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.044 4.044 3 C -0.231 4.231 4 C 0.036 3.964 5 C 0.128 3.872 6 N -0.537 5.537 7 C 0.026 3.974 8 C 0.064 3.936 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.349 5.349 19 O 0.097 5.903 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.167 0.833 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.546 -0.733 -10.507 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.253 4.253 4 C -0.123 4.123 5 C -0.001 4.001 6 N -0.262 5.262 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.010 4.010 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.053 5.053 19 O 0.030 5.970 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.184 0.816 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.632 -2.256 -10.108 18.752 hybrid contribution 0.629 1.988 -0.186 2.094 sum -15.003 -0.268 -10.294 18.197 Atomic orbital electron populations 1.20288 0.84325 1.04441 1.03832 1.24445 0.96270 0.86494 1.03511 1.22401 0.91644 1.00801 1.10435 1.23497 0.97002 0.89887 1.01951 1.20368 0.90417 0.96871 0.92431 1.62051 1.03850 1.51037 1.09245 1.22413 0.96138 0.93794 0.99906 1.22391 0.85436 0.96018 1.02399 1.19106 0.94853 0.97995 0.89046 1.21221 0.98996 1.41239 0.94589 0.92691 1.25000 0.98191 0.95484 0.95666 1.69989 1.37187 1.46684 0.99351 0.86531 0.84781 0.78639 0.78010 1.19761 1.21038 1.20970 1.73867 0.96206 1.16599 1.18590 1.84851 1.11501 1.33180 1.67481 0.90056 0.89360 0.89464 0.81557 0.93061 0.89336 0.96115 0.92665 0.90193 0.91911 0.95896 0.96395 0.95666 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16 2 C -0.04 -0.48 7.49 -35.30 -0.26 -0.75 16 3 C -0.23 -2.82 10.00 -39.39 -0.39 -3.21 16 4 C 0.04 0.56 6.02 -82.10 -0.49 0.07 16 5 C 0.13 2.06 5.55 -4.98 -0.03 2.03 16 6 N -0.54 -10.40 4.75 -244.37 -1.16 -11.56 16 7 C 0.03 0.45 9.14 60.07 0.55 1.00 16 8 C 0.06 1.39 4.90 -3.82 -0.02 1.37 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 10 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 N -0.35 -5.90 12.07 33.42 0.40 -5.50 16 19 O 0.10 1.39 11.20 17.16 0.19 1.58 16 20 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 21 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 23 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 24 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.87 6.35 -51.92 -0.33 0.54 16 28 H 0.08 1.56 6.47 -51.93 -0.34 1.22 16 29 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 30 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.02 0.50 6.55 -51.93 -0.34 0.16 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 281.47 15.07 4.24 4.24 Total: -1.00 -32.66 281.47 -6.18 -38.84 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.75 Total: -5.24 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.82 Total: -12.68 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.02 Total: -43.60 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.66 -6.18 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603845797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.829 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds