Wall clock time and date at job start Thu Apr 9 2020 11:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35450 * 126.77982 * 2 1 4 4 C 1.41369 * 103.98586 * 180.09317 * 3 2 1 5 5 C 1.50704 * 126.80402 * 179.89126 * 4 3 2 6 6 N 1.46893 * 109.47295 * 94.70789 * 5 4 3 7 7 C 1.46901 * 111.00360 * 293.95434 * 6 5 4 8 8 C 1.46906 * 110.99932 * 170.00151 * 6 5 4 9 9 C 1.53002 * 109.47053 * 189.99865 * 8 6 5 10 10 C 1.50696 * 109.46999 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00355 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99521 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00556 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46997 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47364 * 120.00013 * 14 12 10 17 17 H 1.48497 * 109.46870 * 240.00080 * 14 12 10 18 18 N 1.30180 * 106.39978 * 359.62665 * 4 3 2 19 19 O 1.20921 * 111.60064 * 0.23742 * 18 4 3 20 20 H 1.09000 * 109.47351 * 180.29964 * 1 2 3 21 21 H 1.08997 * 109.47232 * 300.30710 * 1 2 3 22 22 H 1.09007 * 109.47004 * 60.30300 * 1 2 3 23 23 H 1.08003 * 128.00234 * 359.95985 * 3 2 1 24 24 H 1.09004 * 109.46439 * 334.70775 * 5 4 3 25 25 H 1.08994 * 109.47235 * 214.71576 * 5 4 3 26 26 H 1.08995 * 109.47046 * 296.04847 * 7 6 5 27 27 H 1.09008 * 109.46903 * 56.04730 * 7 6 5 28 28 H 1.08999 * 109.47457 * 176.04446 * 7 6 5 29 29 H 1.08992 * 109.47459 * 309.99948 * 8 6 5 30 30 H 1.09004 * 109.47040 * 70.00098 * 8 6 5 31 31 H 1.09001 * 109.47142 * 300.00160 * 9 8 6 32 32 H 1.09004 * 109.47006 * 60.00213 * 9 8 6 33 33 H 0.96999 * 120.00022 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5372 -0.0022 5 6 4.9211 1.2998 -0.0055 6 7 5.4038 1.4507 1.3737 7 6 4.5002 2.3035 2.1574 8 6 6.7755 1.9760 1.3968 9 6 7.3322 1.8858 2.8191 10 6 8.7395 2.4241 2.8428 11 1 9.1916 2.7940 1.9343 12 6 9.4502 2.4445 4.0241 13 7 8.8999 1.9936 5.1303 14 14 11.1944 3.1124 4.0536 15 1 11.5785 3.5540 2.6888 16 1 11.2673 4.2656 4.9864 17 1 12.1244 2.0480 4.5089 18 7 3.4763 -0.7565 0.0048 19 8 2.3095 -1.0737 0.0062 20 1 -0.3634 -1.0276 0.0054 21 1 -0.3633 0.5186 0.8872 22 1 -0.3633 0.5092 -0.8928 23 1 2.0345 2.1270 -0.0006 24 1 4.7632 2.2848 -0.4450 25 1 5.6608 0.7547 -0.5918 26 1 4.4962 3.3098 1.7388 27 1 3.4915 1.8918 2.1235 28 1 4.8424 2.3416 3.1916 29 1 7.4008 1.3891 0.7241 30 1 6.7714 3.0170 1.0736 31 1 6.7069 2.4728 3.4919 32 1 7.3363 0.8448 3.1424 33 1 9.3999 2.0076 5.9614 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603845797.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:13 Heat of formation + Delta-G solvation = 33.640763 kcal Electronic energy + Delta-G solvation = -14950.223017 eV Core-core repulsion = 12399.309629 eV Total energy + Delta-G solvation = -2550.913388 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.89525 -38.93136 -35.63040 -34.74973 -34.10809 -31.65436 -28.82986 -28.60576 -27.33217 -24.83473 -23.87759 -21.80991 -20.72212 -18.75460 -18.51156 -18.11953 -16.61322 -16.43618 -16.25848 -15.80558 -14.82563 -14.74768 -14.30543 -14.22225 -13.91029 -13.63136 -13.34699 -13.14901 -12.92542 -12.83735 -12.64090 -12.40338 -11.94424 -11.85605 -11.48399 -11.29021 -11.04772 -10.56224 -10.19701 -9.27581 -8.21143 -6.32961 0.59425 1.23739 1.39959 1.40944 1.54208 2.32494 2.40029 3.08346 3.12454 3.25595 3.61842 4.15613 4.19420 4.23820 4.32652 4.45285 4.55185 4.61842 4.65477 4.74773 4.78788 4.95793 4.96213 5.03545 5.05692 5.30958 5.43408 5.61026 5.75516 6.04301 6.14942 6.28437 6.84416 7.36442 7.41520 8.91524 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.070621 B = 0.004614 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.385844 B = 6066.591422 C = 6116.867795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.237 4.237 4 C 0.017 3.983 5 C 0.131 3.869 6 N -0.558 5.558 7 C 0.032 3.968 8 C 0.081 3.919 9 C 0.035 3.965 10 C -0.544 4.544 11 H 0.063 0.937 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.969 3.031 15 H -0.260 1.260 16 H -0.276 1.276 17 H -0.279 1.279 18 N -0.393 5.393 19 O 0.087 5.913 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.111 0.889 23 H 0.194 0.806 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.034 0.966 31 H -0.002 1.002 32 H -0.015 1.015 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 0.453 -11.706 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.095 4.095 3 C -0.259 4.259 4 C -0.142 4.142 5 C 0.003 3.997 6 N -0.284 5.284 7 C -0.116 4.116 8 C -0.046 4.046 9 C -0.002 4.002 10 C -0.582 4.582 11 H 0.081 0.919 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.205 1.205 18 N -0.098 5.098 19 O 0.021 5.979 20 H 0.110 0.890 21 H 0.124 0.876 22 H 0.130 0.870 23 H 0.212 0.788 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.004 0.996 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.610 -1.070 -11.326 20.132 hybrid contribution 0.796 1.573 0.186 1.773 sum -15.814 0.503 -11.140 19.350 Atomic orbital electron populations 1.20572 0.80556 1.05852 1.05744 1.25354 0.98104 0.85203 1.00823 1.22707 0.90082 1.02394 1.10693 1.23607 0.97925 0.89917 1.02721 1.20345 0.90804 0.98252 0.90269 1.61884 1.03060 1.51634 1.11811 1.22334 0.96423 0.94754 0.98043 1.22007 0.87014 0.96781 0.98795 1.18933 0.94566 0.94873 0.91866 1.21652 1.00035 1.41403 0.95128 0.91871 1.26004 1.03100 0.95568 0.95134 1.70132 1.39271 1.47797 1.00142 0.85337 0.78652 0.77994 0.78668 1.18369 1.20186 1.20511 1.73860 0.97711 1.17705 1.20506 1.84795 1.11196 1.34428 1.67498 0.88985 0.87627 0.87027 0.78834 0.90480 0.90006 0.94247 0.90788 0.93151 0.91895 0.94808 0.98404 0.99630 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 71.24 0.74 0.14 16 2 C -0.03 -0.62 7.49 25.04 0.19 -0.44 16 3 C -0.24 -5.21 10.00 22.40 0.22 -4.98 16 4 C 0.02 0.51 6.02 43.58 0.26 0.77 16 5 C 0.13 4.12 5.55 85.56 0.48 4.59 16 6 N -0.56 -21.66 4.75 -927.04 -4.41 -26.06 16 7 C 0.03 1.12 9.14 127.69 1.17 2.29 16 8 C 0.08 3.55 4.90 86.30 0.42 3.97 16 9 C 0.04 1.94 4.90 29.85 0.15 2.09 16 10 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 13 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 14 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 N -0.39 -13.26 12.07 -49.56 -0.60 -13.86 16 19 O 0.09 2.43 11.20 71.59 0.80 3.23 16 20 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 21 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 23 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 24 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 25 H 0.08 2.62 7.93 -2.39 -0.02 2.60 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 2.25 6.35 -2.38 -0.02 2.23 16 28 H 0.05 2.02 6.47 -2.39 -0.02 2.00 16 29 H 0.06 2.71 7.93 -2.39 -0.02 2.69 16 30 H 0.03 1.39 8.12 -2.38 -0.02 1.37 16 31 H 0.00 -0.14 6.55 -2.39 -0.02 -0.15 16 32 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -72.39 281.47 3.52 -68.88 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: 1.08 Total: 1.44 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.32 Total: -22.56 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -4.72 Total: -97.90 kcal Atomic # 8 Polarization: 2.43 SS G_CDS: 0.80 Total: 3.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.39 3.52 -68.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603845797.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.518 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds