Wall clock time and date at job start Thu Apr 9 2020 11:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47115 * 2 1 4 4 N 1.46502 * 109.46937 * 180.02562 * 3 2 1 5 5 N 1.39151 * 124.44108 * 269.97827 * 4 3 2 6 6 C 1.27564 * 113.16756 * 180.02562 * 5 4 3 7 7 C 1.50703 * 126.41813 * 179.97438 * 6 5 4 8 8 C 1.51442 * 107.16596 * 0.22774 * 6 5 4 9 9 H 1.09004 * 110.60615 * 241.25765 * 8 6 5 10 10 C 1.53001 * 110.61114 * 118.28771 * 8 6 5 11 11 C 1.50700 * 109.47395 * 175.00045 * 10 8 6 12 12 H 1.07998 * 119.99720 * 359.97438 * 11 10 8 13 13 C 1.37878 * 119.99908 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47053 * 59.99386 * 15 13 11 17 17 H 1.48497 * 109.47106 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46699 * 299.99481 * 15 13 11 19 19 C 1.34950 * 124.43982 * 90.00631 * 4 3 2 20 20 O 1.21304 * 127.49886 * 359.97234 * 19 4 3 21 21 H 1.09007 * 109.47271 * 59.99290 * 1 2 3 22 22 H 1.08999 * 109.47702 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46834 * 299.99970 * 1 2 3 24 24 H 1.09008 * 109.46893 * 240.00290 * 2 1 3 25 25 H 1.08999 * 109.46969 * 120.00568 * 2 1 3 26 26 H 1.09008 * 109.47003 * 60.00357 * 3 2 1 27 27 H 1.08999 * 109.47666 * 300.00142 * 3 2 1 28 28 H 1.09002 * 109.47152 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.46980 * 240.02513 * 7 6 5 30 30 H 1.09004 * 109.47113 * 120.02494 * 7 6 5 31 31 H 1.08999 * 109.46845 * 295.00563 * 10 8 6 32 32 H 1.09004 * 109.46444 * 54.99709 * 10 8 6 33 33 H 0.96997 * 119.99315 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.2925 1.4427 1.1466 6 6 5.5434 1.4431 0.8967 7 6 6.6583 1.4440 1.9107 8 6 5.6982 1.4489 -0.6097 9 1 6.2251 0.5554 -0.9447 10 6 6.4289 2.7115 -1.0712 11 6 6.6777 2.6338 -2.5555 12 1 6.3480 1.7702 -3.1138 13 6 7.3271 3.6650 -3.2005 14 7 7.7291 4.7165 -2.5204 15 14 7.6349 3.5691 -5.0405 16 1 6.3373 3.4599 -5.7543 17 1 8.3442 4.7944 -5.4882 18 1 8.4673 2.3767 -5.3416 19 6 4.2677 1.4427 -1.1139 20 8 3.8912 1.4425 -2.2670 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6767 1.9564 -0.8899 28 1 6.2357 1.4438 2.9154 29 1 7.2722 2.3344 1.7749 30 1 7.2735 0.5544 1.7751 31 1 5.8174 3.5863 -0.8505 32 1 7.3812 2.7922 -0.5468 33 1 8.1856 5.4420 -2.9743 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603920653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:15 Heat of formation + Delta-G solvation = -22.575242 kcal Electronic energy + Delta-G solvation = -15464.875186 eV Core-core repulsion = 12911.524089 eV Total energy + Delta-G solvation = -2553.351097 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.26625 -38.46610 -36.72096 -35.29220 -33.41469 -32.16523 -29.64921 -28.20273 -26.46530 -24.31045 -22.59663 -21.72604 -20.46208 -18.59904 -17.82587 -17.04454 -16.59424 -16.21654 -15.90287 -15.52155 -14.65969 -14.52988 -14.40621 -14.10126 -13.54272 -13.33133 -13.29832 -13.19418 -12.98478 -12.83067 -12.64378 -12.60715 -12.18912 -11.91507 -11.76307 -11.57781 -11.27033 -10.66972 -10.43506 -9.58953 -8.23767 -6.31638 0.68445 1.36467 1.40163 1.45794 1.48317 1.62931 2.39421 2.99562 3.11894 3.30574 3.84390 3.93943 4.02149 4.24446 4.32528 4.46406 4.51523 4.63146 4.76786 4.84173 4.90775 5.03951 5.06156 5.16938 5.20206 5.32629 5.34384 5.39735 5.59637 5.73485 6.13486 6.71021 6.78173 6.92272 7.35992 8.87267 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.007964 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.955192 B = 3514.797441 C = 4243.785736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.133 3.867 4 N -0.482 5.482 5 N -0.262 5.262 6 C 0.116 3.884 7 C -0.073 4.073 8 C -0.137 4.137 9 H 0.130 0.870 10 C 0.068 3.932 11 C -0.534 4.534 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.284 1.284 17 H -0.276 1.276 18 H -0.261 1.261 19 C 0.494 3.506 20 O -0.534 6.534 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.112 0.888 31 H -0.016 1.016 32 H 0.041 0.959 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 -8.335 10.105 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.013 3.987 4 N -0.301 5.301 5 N -0.068 5.068 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.161 4.161 9 H 0.147 0.853 10 C 0.030 3.970 11 C -0.572 4.572 12 H 0.069 0.931 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.780 3.220 16 H -0.210 1.210 17 H -0.201 1.201 18 H -0.186 1.186 19 C 0.283 3.717 20 O -0.409 6.409 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.002 0.998 32 H 0.059 0.941 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.060 -8.167 10.103 15.288 hybrid contribution 0.540 0.328 -1.987 2.085 sum -7.520 -7.840 8.116 13.560 Atomic orbital electron populations 1.21656 0.92387 1.03057 1.02770 1.21840 0.98220 0.95165 1.01751 1.21719 0.74135 0.98981 1.03892 1.50005 1.07311 1.70218 1.02590 1.74559 1.04934 1.17123 1.10231 1.26043 0.93702 0.93116 0.94779 1.20565 0.92332 1.05390 0.94867 1.21969 0.94967 1.04628 0.94516 0.85280 1.18600 0.94478 0.88204 0.95731 1.21433 1.36706 1.04629 0.94394 0.93099 1.25750 0.95400 0.94910 1.02826 1.70031 1.40407 1.08480 1.37691 0.85648 0.78093 0.78162 0.80055 1.20976 1.20057 1.18579 1.21697 0.90134 0.74741 0.85151 1.90657 1.80426 1.50388 1.19384 0.92554 0.91089 0.90852 0.93949 0.91100 0.87610 0.90731 0.88068 0.88972 0.86999 0.99793 0.94098 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.13 -3.31 6.26 30.59 0.19 -3.12 16 3 C 0.13 4.02 6.24 86.38 0.54 4.56 16 4 N -0.48 -18.35 3.54 -461.66 -1.63 -19.99 16 5 N -0.26 -9.04 12.02 -40.84 -0.49 -9.53 16 6 C 0.12 3.82 6.93 46.83 0.32 4.14 16 7 C -0.07 -1.60 10.47 71.24 0.75 -0.86 16 8 C -0.14 -5.80 2.96 -11.74 -0.03 -5.83 16 9 H 0.13 5.16 8.14 -2.39 -0.02 5.14 16 10 C 0.07 3.51 4.49 29.85 0.13 3.64 16 11 C -0.53 -31.10 8.45 25.60 0.22 -30.88 16 12 H 0.05 3.03 7.44 -2.91 -0.02 3.01 16 13 C 0.01 0.56 5.46 84.65 0.46 1.02 16 14 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 15 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 16 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.49 22.78 7.60 87.94 0.67 23.45 16 20 O -0.53 -28.54 17.04 -3.10 -0.05 -28.59 16 21 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 27 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 2.10 8.02 -2.39 -0.02 2.08 16 30 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 31 H -0.02 -0.95 8.12 -2.39 -0.02 -0.97 16 32 H 0.04 2.05 8.00 -2.38 -0.02 2.03 16 33 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.36 286.72 5.17 -67.19 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.08 Total: 3.85 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.96 Total: -5.73 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.84 Total: -84.85 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.59 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.36 5.17 -67.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603920653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.614 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds