Wall clock time and date at job start Thu Apr 9 2020 11:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35455 * 126.77345 * 2 1 4 4 C 1.41376 * 103.98167 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80261 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47017 * 95.00263 * 5 4 3 7 7 C 1.46895 * 111.00231 * 66.05067 * 6 5 4 8 8 C 1.46903 * 110.99984 * 190.00287 * 6 5 4 9 9 H 1.09007 * 109.47052 * 54.99665 * 8 6 5 10 10 C 1.53000 * 109.47096 * 295.00215 * 8 6 5 11 11 C 1.50694 * 109.47066 * 174.99980 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 N 1.30180 * 106.39809 * 0.26725 * 4 3 2 20 20 O 1.20916 * 111.60039 * 359.53114 * 19 4 3 21 21 H 1.09004 * 109.47263 * 90.00093 * 1 2 3 22 22 H 1.09003 * 109.46907 * 209.99942 * 1 2 3 23 23 H 1.08994 * 109.47102 * 329.99398 * 1 2 3 24 24 H 1.07992 * 128.00632 * 359.94548 * 3 2 1 25 25 H 1.09007 * 109.47097 * 335.00391 * 5 4 3 26 26 H 1.09000 * 109.47410 * 215.00702 * 5 4 3 27 27 H 1.08998 * 109.47176 * 183.95703 * 7 6 5 28 28 H 1.09001 * 109.46775 * 303.95460 * 7 6 5 29 29 H 1.09003 * 109.47375 * 63.94911 * 7 6 5 30 30 H 1.08995 * 109.47131 * 180.02562 * 10 8 6 31 31 H 1.09002 * 109.47106 * 299.99893 * 10 8 6 32 32 H 1.08998 * 109.47089 * 59.99840 * 10 8 6 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 7 5.4042 1.4447 1.3801 7 6 5.7648 0.1401 1.9510 8 6 6.5357 2.3792 1.4464 9 1 6.2474 3.3311 1.0002 10 6 7.7245 1.7960 0.6798 11 6 6.9241 2.5963 2.8861 12 1 6.3842 2.0910 3.6733 13 6 7.9682 3.4410 3.1987 14 7 8.6254 4.0567 2.2402 15 14 8.4492 3.7106 4.9834 16 1 7.6835 4.8574 5.5346 17 1 8.1434 2.4879 5.7687 18 1 9.9032 4.0010 5.0657 19 7 3.4764 -0.7564 -0.0049 20 8 2.3096 -1.0736 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 2.0344 2.1270 -0.0008 25 1 4.7631 2.2870 -0.4346 26 1 5.6606 0.7576 -0.5887 27 1 6.0523 0.2673 2.9947 28 1 4.9093 -0.5325 1.8892 29 1 6.6003 -0.2825 1.3928 30 1 8.5641 2.4892 0.7294 31 1 8.0128 0.8441 1.1258 32 1 7.4435 1.6389 -0.3616 33 1 9.3597 4.6512 2.4601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:20 Heat of formation + Delta-G solvation = 66.416258 kcal Electronic energy + Delta-G solvation = -15470.018820 eV Core-core repulsion = 12920.526684 eV Total energy + Delta-G solvation = -2549.492136 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.62874 -37.38457 -34.10465 -33.25896 -32.27460 -28.80759 -27.77697 -27.10379 -25.16766 -24.04310 -22.54266 -20.10998 -18.92484 -17.39178 -16.92548 -16.14730 -15.17203 -14.49415 -14.28929 -13.88902 -13.50205 -13.33092 -13.25460 -12.66460 -12.40527 -12.05812 -11.58194 -11.23322 -11.04308 -10.91425 -10.79703 -10.61165 -10.43998 -10.01656 -9.98567 -9.68588 -9.08559 -8.88883 -8.39143 -7.19744 -6.01667 -4.05248 1.70467 2.55520 3.31588 3.33457 3.37734 3.41738 4.41029 4.55124 4.66062 5.15180 5.24377 5.29153 5.31303 5.36156 5.50217 5.76281 5.82577 6.06545 6.15733 6.28566 6.36708 6.47654 6.68980 6.83182 6.92920 7.09683 7.44536 7.70844 7.81808 8.07524 8.35338 8.56010 8.59583 9.00203 9.59627 11.05589 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048525 B = 0.006103 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.881854 B = 4587.048286 C = 4748.738807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.051 4.051 3 C -0.216 4.216 4 C 0.045 3.955 5 C 0.126 3.874 6 N -0.529 5.529 7 C 0.034 3.966 8 C 0.211 3.789 9 H 0.041 0.959 10 C -0.174 4.174 11 C -0.499 4.499 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.275 1.275 18 H -0.288 1.288 19 N -0.368 5.368 20 O 0.091 5.909 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.169 0.831 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.008 0.992 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -5.559 -5.041 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C -0.238 4.238 4 C -0.115 4.115 5 C -0.004 4.004 6 N -0.253 5.253 7 C -0.114 4.114 8 C 0.106 3.894 9 H 0.059 0.941 10 C -0.233 4.233 11 C -0.538 4.538 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.200 1.200 18 H -0.213 1.213 19 N -0.074 5.074 20 O 0.025 5.975 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.186 0.814 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.229 -6.262 -4.788 14.549 hybrid contribution 0.721 0.687 0.457 1.096 sum -11.507 -5.575 -4.331 13.500 Atomic orbital electron populations 1.20251 0.84469 1.04331 1.03578 1.24406 0.96149 0.86566 1.04321 1.22407 0.91488 1.00819 1.09080 1.23696 0.97790 0.89503 1.00467 1.20394 0.88796 0.97812 0.93349 1.62376 1.37827 1.10853 1.14281 1.22252 0.97959 0.90352 1.00882 1.19348 0.83593 0.89972 0.96534 0.94087 1.22421 1.04187 1.01148 0.95555 1.21098 1.14888 1.26346 0.91458 0.91930 1.24923 0.96209 0.95709 0.97417 1.69886 1.22198 1.29843 1.31470 0.86500 0.77440 0.78535 0.84942 1.20668 1.19961 1.21343 1.73836 0.96442 1.16832 1.20259 1.84782 1.11505 1.33207 1.67973 0.89884 0.90206 0.89283 0.81392 0.89335 0.93750 0.90849 0.93739 0.96193 0.89183 0.94955 0.97349 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 36.01 0.38 -0.14 16 2 C -0.05 -0.65 7.49 -35.30 -0.26 -0.91 16 3 C -0.22 -3.16 11.06 -39.38 -0.44 -3.60 16 4 C 0.04 0.79 6.06 -82.10 -0.50 0.30 16 5 C 0.13 2.44 4.99 -4.98 -0.02 2.41 16 6 N -0.53 -11.89 4.73 -237.73 -1.13 -13.01 16 7 C 0.03 0.74 8.72 60.06 0.52 1.26 16 8 C 0.21 5.37 2.34 -68.87 -0.16 5.21 16 9 H 0.04 1.12 8.03 -51.92 -0.42 0.70 16 10 C -0.17 -4.27 8.28 37.16 0.31 -3.96 16 11 C -0.50 -13.77 7.94 -34.44 -0.27 -14.04 16 12 H 0.06 1.74 6.75 -52.49 -0.35 1.39 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 N -0.37 -6.65 11.00 33.42 0.37 -6.28 16 20 O 0.09 1.41 11.20 17.19 0.19 1.60 16 21 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 25 H 0.09 1.61 8.00 -51.93 -0.42 1.19 16 26 H 0.04 0.88 6.94 -51.93 -0.36 0.52 16 27 H 0.07 1.66 6.53 -51.93 -0.34 1.33 16 28 H 0.04 0.92 6.37 -51.93 -0.33 0.59 16 29 H 0.02 0.43 6.28 -51.93 -0.33 0.10 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.03 0.78 6.39 -51.93 -0.33 0.45 16 32 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -30.06 270.64 -5.79 -35.85 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.37 Total: -1.90 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.54 Total: -11.96 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.13 Total: -44.09 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.06 -5.79 -35.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.263 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds