Wall clock time and date at job start Thu Apr 9 2020 11:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35455 * 126.77345 * 2 1 4 4 C 1.41376 * 103.98167 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80261 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47017 * 95.00263 * 5 4 3 7 7 C 1.46895 * 111.00231 * 66.05067 * 6 5 4 8 8 C 1.46903 * 110.99984 * 190.00287 * 6 5 4 9 9 H 1.09007 * 109.47052 * 54.99665 * 8 6 5 10 10 C 1.53000 * 109.47096 * 295.00215 * 8 6 5 11 11 C 1.50694 * 109.47066 * 174.99980 * 8 6 5 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 6 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 6 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 N 1.30180 * 106.39809 * 0.26725 * 4 3 2 20 20 O 1.20916 * 111.60039 * 359.53114 * 19 4 3 21 21 H 1.09004 * 109.47263 * 90.00093 * 1 2 3 22 22 H 1.09003 * 109.46907 * 209.99942 * 1 2 3 23 23 H 1.08994 * 109.47102 * 329.99398 * 1 2 3 24 24 H 1.07992 * 128.00632 * 359.94548 * 3 2 1 25 25 H 1.09007 * 109.47097 * 335.00391 * 5 4 3 26 26 H 1.09000 * 109.47410 * 215.00702 * 5 4 3 27 27 H 1.08998 * 109.47176 * 183.95703 * 7 6 5 28 28 H 1.09001 * 109.46775 * 303.95460 * 7 6 5 29 29 H 1.09003 * 109.47375 * 63.94911 * 7 6 5 30 30 H 1.08995 * 109.47131 * 180.02562 * 10 8 6 31 31 H 1.09002 * 109.47106 * 299.99893 * 10 8 6 32 32 H 1.08998 * 109.47089 * 59.99840 * 10 8 6 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0003 6 7 5.4042 1.4447 1.3801 7 6 5.7648 0.1401 1.9510 8 6 6.5357 2.3792 1.4464 9 1 6.2474 3.3311 1.0002 10 6 7.7245 1.7960 0.6798 11 6 6.9241 2.5963 2.8861 12 1 6.3842 2.0910 3.6733 13 6 7.9682 3.4410 3.1987 14 7 8.6254 4.0567 2.2402 15 14 8.4492 3.7106 4.9834 16 1 7.6835 4.8574 5.5346 17 1 8.1434 2.4879 5.7687 18 1 9.9032 4.0010 5.0657 19 7 3.4764 -0.7564 -0.0049 20 8 2.3096 -1.0736 0.0005 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 2.0344 2.1270 -0.0008 25 1 4.7631 2.2870 -0.4346 26 1 5.6606 0.7576 -0.5887 27 1 6.0523 0.2673 2.9947 28 1 4.9093 -0.5325 1.8892 29 1 6.6003 -0.2825 1.3928 30 1 8.5641 2.4892 0.7294 31 1 8.0128 0.8441 1.1258 32 1 7.4435 1.6389 -0.3616 33 1 9.3597 4.6512 2.4601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:20 Heat of formation + Delta-G solvation = 46.809274 kcal Electronic energy + Delta-G solvation = -15470.869042 eV Core-core repulsion = 12920.526684 eV Total energy + Delta-G solvation = -2550.342358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.86330 -39.17769 -35.58876 -34.53139 -33.90912 -30.71762 -29.02380 -28.39077 -27.24104 -25.76682 -23.84471 -21.73754 -20.45747 -18.65220 -18.28867 -18.05243 -17.04500 -16.17043 -15.83831 -15.51010 -14.90502 -14.60233 -14.30943 -13.88761 -13.83411 -13.43249 -13.18001 -12.98583 -12.84623 -12.70946 -12.62296 -12.41893 -12.09749 -11.89592 -11.81855 -11.15012 -10.88949 -10.50787 -10.16621 -9.01001 -8.12511 -6.23339 0.60321 1.29028 1.42919 1.43488 1.53884 2.33984 2.42857 3.16738 3.18555 3.53083 3.59322 4.19271 4.30192 4.36324 4.50221 4.56322 4.63767 4.70416 4.79645 4.80559 4.85102 4.98902 5.04133 5.07421 5.12484 5.32765 5.46890 5.66629 5.73641 6.10198 6.37547 6.61068 6.87613 7.41057 7.45484 8.93887 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.048525 B = 0.006103 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.881854 B = 4587.048286 C = 4748.738807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.030 4.030 3 C -0.232 4.232 4 C 0.020 3.980 5 C 0.130 3.870 6 N -0.535 5.535 7 C 0.046 3.954 8 C 0.216 3.784 9 H 0.018 0.982 10 C -0.160 4.160 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.960 3.040 16 H -0.275 1.275 17 H -0.272 1.272 18 H -0.283 1.283 19 N -0.396 5.396 20 O 0.089 5.911 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.107 0.893 24 H 0.188 0.812 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -5.818 -4.763 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.094 4.094 3 C -0.254 4.254 4 C -0.138 4.138 5 C 0.001 3.999 6 N -0.260 5.260 7 C -0.103 4.103 8 C 0.109 3.891 9 H 0.036 0.964 10 C -0.219 4.219 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.185 4.185 14 N -0.558 5.558 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.208 1.208 19 N -0.102 5.102 20 O 0.023 5.977 21 H 0.125 0.875 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.205 0.795 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.005 -6.528 -4.518 16.098 hybrid contribution 1.159 0.735 0.313 1.408 sum -12.845 -5.793 -4.204 14.705 Atomic orbital electron populations 1.20558 0.80378 1.05994 1.05568 1.25289 0.98034 0.84974 1.01098 1.22672 0.90308 1.02360 1.10079 1.23596 0.98153 0.89887 1.02128 1.20317 0.89654 0.98563 0.91337 1.62255 1.36466 1.10723 1.16529 1.22118 0.98154 0.90164 0.99848 1.19126 0.84664 0.89776 0.95492 0.96437 1.22228 1.03019 1.00097 0.96603 1.21324 1.15238 1.26666 0.92348 0.92728 1.25666 0.96097 0.95379 1.01342 1.69999 1.22458 1.30136 1.33249 0.85521 0.77195 0.78488 0.80197 1.20045 1.19632 1.20840 1.73815 0.97876 1.17088 1.21441 1.84736 1.11130 1.34180 1.67607 0.87519 0.88682 0.87432 0.79499 0.88562 0.94526 0.92226 0.92718 0.96607 0.91501 0.95284 0.95534 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.45 71.24 0.74 -0.01 16 2 C -0.03 -0.69 7.49 25.04 0.19 -0.51 16 3 C -0.23 -6.37 11.06 22.40 0.25 -6.12 16 4 C 0.02 0.71 6.06 43.58 0.26 0.97 16 5 C 0.13 5.04 4.99 85.56 0.43 5.47 16 6 N -0.54 -24.22 4.73 -906.03 -4.29 -28.51 16 7 C 0.05 2.00 8.72 127.69 1.11 3.11 16 8 C 0.22 11.15 2.34 44.17 0.10 11.25 16 9 H 0.02 0.99 8.03 -2.38 -0.02 0.97 16 10 C -0.16 -7.97 8.28 71.98 0.60 -7.37 16 11 C -0.52 -28.82 7.94 25.60 0.20 -28.62 16 12 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 13 C 0.01 0.77 5.30 84.66 0.45 1.22 16 14 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 N -0.40 -14.04 11.00 -49.57 -0.55 -14.58 16 20 O 0.09 2.63 11.20 71.68 0.80 3.44 16 21 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 22 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.19 4.22 8.06 -2.91 -0.02 4.20 16 25 H 0.10 3.51 8.00 -2.38 -0.02 3.49 16 26 H 0.04 1.46 6.94 -2.39 -0.02 1.44 16 27 H 0.06 2.73 6.53 -2.39 -0.02 2.72 16 28 H 0.05 2.26 6.37 -2.39 -0.02 2.24 16 29 H 0.02 0.69 6.28 -2.39 -0.01 0.67 16 30 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 31 H 0.03 1.41 6.39 -2.39 -0.02 1.40 16 32 H 0.03 1.17 6.75 -2.39 -0.02 1.15 16 33 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -64.44 270.64 3.68 -60.76 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.10 Total: 5.92 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.34 Total: -20.60 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -4.59 Total: -95.48 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.80 Total: 3.44 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.44 3.68 -60.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.574 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds