Wall clock time and date at job start Thu Apr 9 2020 11:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46709 * 2 1 4 4 H 1.08998 * 109.47659 * 55.00036 * 3 2 1 5 5 C 1.53005 * 109.47157 * 294.99801 * 3 2 1 6 6 C 1.50701 * 109.46888 * 174.99970 * 3 2 1 7 7 N 1.30275 * 126.28515 * 60.00270 * 6 3 2 8 8 N 1.28661 * 109.38026 * 179.73127 * 7 6 3 9 9 C 1.30274 * 109.38613 * 0.44078 * 8 7 6 10 10 C 1.50698 * 126.28313 * 179.82848 * 9 8 7 11 11 H 1.09001 * 109.46875 * 179.68765 * 10 9 8 12 12 C 1.52999 * 109.47178 * 299.68914 * 10 9 8 13 13 C 1.50697 * 109.46993 * 59.69086 * 10 9 8 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 O 1.34362 * 126.28151 * 239.99885 * 6 3 2 22 22 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47518 * 299.99895 * 1 2 3 24 24 H 1.09003 * 109.47242 * 60.00094 * 1 2 3 25 25 H 1.09000 * 109.47011 * 240.00033 * 2 1 3 26 26 H 1.08996 * 109.46624 * 119.99730 * 2 1 3 27 27 H 1.09008 * 109.46899 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.47241 * 299.99891 * 5 3 2 29 29 H 1.08998 * 109.47184 * 60.00571 * 5 3 2 30 30 H 1.08993 * 109.47037 * 60.00131 * 12 10 9 31 31 H 1.08997 * 109.47084 * 180.02562 * 12 10 9 32 32 H 1.09007 * 109.46899 * 300.00480 * 12 10 9 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 7 4.3843 0.8941 -0.7035 8 7 5.5850 1.0968 -0.2880 9 6 5.5491 1.7752 0.8235 10 6 6.7380 2.2169 1.6375 11 1 6.3945 2.7709 2.5111 12 6 7.5299 0.9889 2.0913 13 6 7.6215 3.1020 0.7967 14 1 7.3518 3.3190 -0.2262 15 6 8.7771 3.6305 1.3320 16 7 9.1054 3.3666 2.5779 17 14 9.8763 4.7214 0.2874 18 1 9.1106 5.9126 -0.1597 19 1 11.0472 5.1576 1.0901 20 1 10.3455 3.9607 -0.8985 21 8 4.2578 2.0139 1.1079 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.9988 3.1541 -1.3076 28 1 2.0698 1.5875 -2.1492 29 1 0.5488 2.1252 -1.3970 30 1 7.8733 0.4349 1.2177 31 1 8.3896 1.3084 2.6804 32 1 6.8907 0.3487 2.6994 33 1 9.9181 3.7388 2.9545 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327040407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:26 Heat of formation + Delta-G solvation = 7.984687 kcal Electronic energy + Delta-G solvation = -15334.345866 eV Core-core repulsion = 12782.319948 eV Total energy + Delta-G solvation = -2552.025919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.37654 -36.67207 -35.30451 -34.63594 -31.51410 -30.19587 -28.23512 -25.36328 -25.14057 -23.41377 -22.56246 -20.56242 -19.93615 -16.76160 -16.60600 -16.07937 -15.19608 -15.16267 -14.64468 -13.76393 -13.40430 -12.94301 -12.81119 -12.30468 -11.90729 -11.75234 -11.56352 -11.52249 -11.22487 -11.04503 -10.98533 -10.91476 -10.81114 -10.67572 -10.42960 -10.22849 -9.93447 -9.32268 -8.56003 -8.48596 -6.19297 -4.26637 1.99981 3.01028 3.24952 3.28173 3.31347 3.37804 4.31993 4.48341 4.73124 4.85468 5.10222 5.13551 5.23486 5.35040 5.46339 5.54858 5.72272 5.79094 5.88187 5.93358 6.05662 6.19146 6.23269 6.39866 6.47917 6.63663 6.84740 6.93182 7.40616 7.66607 7.83905 8.04751 8.73359 9.20271 9.38265 10.87490 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051418 B = 0.006177 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.425944 B = 4531.863677 C = 4785.093441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.015 3.985 4 H 0.094 0.906 5 C -0.145 4.145 6 C 0.119 3.881 7 N -0.288 5.288 8 N -0.306 5.306 9 C 0.219 3.781 10 C 0.130 3.870 11 H 0.056 0.944 12 C -0.131 4.131 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.907 3.093 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.236 6.236 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.013 0.987 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -3.232 -2.211 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.005 4.005 4 H 0.112 0.888 5 C -0.202 4.202 6 C -0.093 4.093 7 N -0.135 5.135 8 N -0.151 5.151 9 C 0.010 3.990 10 C 0.110 3.890 11 H 0.074 0.926 12 C -0.189 4.189 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.198 1.198 21 O -0.116 6.116 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.032 0.968 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.019 -3.844 -3.097 13.923 hybrid contribution 0.213 1.246 0.523 1.368 sum -12.806 -2.598 -2.573 13.317 Atomic orbital electron populations 1.21819 0.94901 1.01995 1.02104 1.21565 0.96023 0.94313 1.03450 1.19556 0.81606 0.98661 1.00689 0.88805 1.21883 1.01579 1.00777 0.95983 1.27603 0.97810 0.97432 0.86466 1.74197 0.95830 1.19088 1.24390 1.74376 1.12702 1.17901 1.10135 1.29623 0.82801 0.92480 0.94094 1.17744 0.82802 0.95194 0.93246 0.92561 1.21802 1.01345 0.95366 1.00386 1.20826 1.06528 1.29139 0.98547 0.91860 1.24892 0.97232 0.96219 0.95198 1.69854 1.25310 1.44277 1.13159 0.86406 0.79581 0.80520 0.80136 1.20107 1.20995 1.19840 1.84813 1.19879 1.61215 1.45683 0.92344 0.92555 0.92134 0.90504 0.91640 0.92240 0.91217 0.90998 0.93705 0.88197 0.96806 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.88 16 2 C -0.12 -1.30 5.38 -26.73 -0.14 -1.45 16 3 C 0.02 0.20 2.86 -91.77 -0.26 -0.06 16 4 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 5 C -0.14 -1.65 8.93 37.16 0.33 -1.32 16 6 C 0.12 2.26 6.99 -12.94 -0.09 2.17 16 7 N -0.29 -6.27 12.22 32.55 0.40 -5.87 16 8 N -0.31 -7.55 12.22 32.55 0.40 -7.16 16 9 C 0.22 5.33 6.92 -12.94 -0.09 5.24 16 10 C 0.13 3.33 2.77 -92.93 -0.26 3.08 16 11 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.13 -3.16 8.95 37.16 0.33 -2.83 16 13 C -0.51 -14.12 8.55 -34.44 -0.29 -14.42 16 14 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 16 N -0.89 -24.28 11.33 55.43 0.63 -23.65 16 17 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 O -0.24 -5.16 10.87 5.38 0.06 -5.10 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 30 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 2.55 6.08 -51.93 -0.32 2.23 16 32 H 0.01 0.29 8.14 -51.92 -0.42 -0.14 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -29.53 280.51 -4.29 -33.81 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.77 Total: -3.58 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -0.21 Total: -8.75 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 1.42 Total: -36.68 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.06 Total: -5.10 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.53 -4.29 -33.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327040407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.797 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds