Wall clock time and date at job start Thu Apr 9 2020 11:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46709 * 2 1 4 4 H 1.08998 * 109.47659 * 55.00036 * 3 2 1 5 5 C 1.53005 * 109.47157 * 294.99801 * 3 2 1 6 6 C 1.50701 * 109.46888 * 174.99970 * 3 2 1 7 7 N 1.30275 * 126.28515 * 60.00270 * 6 3 2 8 8 N 1.28661 * 109.38026 * 179.73127 * 7 6 3 9 9 C 1.30274 * 109.38613 * 0.44078 * 8 7 6 10 10 C 1.50698 * 126.28313 * 179.82848 * 9 8 7 11 11 H 1.09001 * 109.46875 * 179.68765 * 10 9 8 12 12 C 1.52999 * 109.47178 * 299.68914 * 10 9 8 13 13 C 1.50697 * 109.46993 * 59.69086 * 10 9 8 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 10 9 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 10 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 O 1.34362 * 126.28151 * 239.99885 * 6 3 2 22 22 H 1.09003 * 109.47287 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47518 * 299.99895 * 1 2 3 24 24 H 1.09003 * 109.47242 * 60.00094 * 1 2 3 25 25 H 1.09000 * 109.47011 * 240.00033 * 2 1 3 26 26 H 1.08996 * 109.46624 * 119.99730 * 2 1 3 27 27 H 1.09008 * 109.46899 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.47241 * 299.99891 * 5 3 2 29 29 H 1.08998 * 109.47184 * 60.00571 * 5 3 2 30 30 H 1.08993 * 109.47037 * 60.00131 * 12 10 9 31 31 H 1.08997 * 109.47084 * 180.02562 * 12 10 9 32 32 H 1.09007 * 109.46899 * 300.00480 * 12 10 9 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 7 4.3843 0.8941 -0.7035 8 7 5.5850 1.0968 -0.2880 9 6 5.5491 1.7752 0.8235 10 6 6.7380 2.2169 1.6375 11 1 6.3945 2.7709 2.5111 12 6 7.5299 0.9889 2.0913 13 6 7.6215 3.1020 0.7967 14 1 7.3518 3.3190 -0.2262 15 6 8.7771 3.6305 1.3320 16 7 9.1054 3.3666 2.5779 17 14 9.8763 4.7214 0.2874 18 1 9.1106 5.9126 -0.1597 19 1 11.0472 5.1576 1.0901 20 1 10.3455 3.9607 -0.8985 21 8 4.2578 2.0139 1.1079 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.9988 3.1541 -1.3076 28 1 2.0698 1.5875 -2.1492 29 1 0.5488 2.1252 -1.3970 30 1 7.8733 0.4349 1.2177 31 1 8.3896 1.3084 2.6804 32 1 6.8907 0.3487 2.6994 33 1 9.9181 3.7388 2.9545 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327040407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:26 Heat of formation + Delta-G solvation = -13.160236 kcal Electronic energy + Delta-G solvation = -15335.262779 eV Core-core repulsion = 12782.319948 eV Total energy + Delta-G solvation = -2552.942831 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.11369 -37.76960 -37.07270 -36.55217 -33.41367 -31.40333 -29.68138 -27.40750 -26.28484 -25.27612 -23.86457 -22.36687 -21.20881 -18.68890 -18.20070 -17.96155 -16.93551 -16.41765 -15.96317 -15.29563 -14.76393 -14.61347 -13.94217 -13.65386 -13.34589 -13.12864 -13.05097 -12.89935 -12.84590 -12.70240 -12.61519 -12.53694 -12.32437 -12.17368 -11.88593 -11.72590 -11.60034 -11.31162 -10.60752 -10.26315 -8.25326 -6.40477 0.31665 1.36974 1.43578 1.44061 1.48785 1.54477 2.39068 3.00844 3.04594 3.59292 3.82031 3.90606 4.07388 4.27685 4.50617 4.51795 4.53659 4.66286 4.70204 4.80117 4.85938 4.91887 4.98716 5.03780 5.12126 5.17473 5.35838 5.36581 5.48637 5.61822 5.77424 6.01226 6.60252 7.27309 7.45035 8.80869 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051418 B = 0.006177 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.425944 B = 4531.863677 C = 4785.093441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.011 3.989 4 H 0.117 0.883 5 C -0.141 4.141 6 C 0.144 3.856 7 N -0.315 5.315 8 N -0.328 5.328 9 C 0.201 3.799 10 C 0.130 3.870 11 H 0.043 0.957 12 C -0.118 4.118 13 C -0.536 4.536 14 H 0.046 0.954 15 C 0.029 3.971 16 N -0.905 5.905 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.274 1.274 21 O -0.242 6.242 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 -2.936 -2.513 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.009 4.009 4 H 0.135 0.865 5 C -0.198 4.198 6 C -0.068 4.068 7 N -0.160 5.160 8 N -0.173 5.173 9 C -0.009 4.009 10 C 0.110 3.890 11 H 0.061 0.939 12 C -0.176 4.176 13 C -0.574 4.574 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.543 5.543 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.200 1.200 21 O -0.122 6.122 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.664 -3.563 -3.406 15.470 hybrid contribution 0.596 1.125 0.614 1.413 sum -14.068 -2.439 -2.792 14.549 Atomic orbital electron populations 1.21795 0.91886 1.03120 1.03338 1.21563 0.98462 0.92474 1.02499 1.20118 0.77440 1.00675 1.02689 0.86520 1.21910 1.04037 0.99653 0.94213 1.28969 0.99734 0.93943 0.84197 1.74140 0.95355 1.20992 1.25493 1.74303 1.14436 1.18197 1.10333 1.29218 0.83434 0.93837 0.94452 1.17571 0.83390 0.95288 0.92719 0.93864 1.21626 1.00982 0.95074 0.99936 1.20943 1.07751 1.30519 0.98155 0.93545 1.25598 0.98107 0.97160 0.96320 1.69929 1.25720 1.44569 1.14082 0.85496 0.78124 0.78777 0.78619 1.19729 1.19615 1.19973 1.84815 1.19251 1.61596 1.46564 0.91384 0.91445 0.90732 0.91563 0.92642 0.93095 0.92404 0.87021 0.94606 0.89580 0.94792 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.11 -2.27 5.38 30.59 0.16 -2.11 16 3 C 0.01 0.26 2.86 -11.54 -0.03 0.22 16 4 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 5 C -0.14 -2.84 8.93 71.98 0.64 -2.20 16 6 C 0.14 5.37 6.99 88.34 0.62 5.99 16 7 N -0.31 -13.75 12.22 -165.50 -2.02 -15.78 16 8 N -0.33 -16.46 12.22 -165.50 -2.02 -18.49 16 9 C 0.20 9.96 6.92 88.34 0.61 10.57 16 10 C 0.13 6.83 2.77 -12.29 -0.03 6.80 16 11 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 12 C -0.12 -5.79 8.95 71.98 0.64 -5.15 16 13 C -0.54 -30.14 8.55 25.60 0.22 -29.92 16 14 H 0.05 2.71 7.74 -2.92 -0.02 2.68 16 15 C 0.03 1.58 5.30 84.66 0.45 2.03 16 16 N -0.91 -49.60 11.33 21.45 0.24 -49.36 16 17 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 21 O -0.24 -10.59 10.87 -3.66 -0.04 -10.63 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.76 6.57 -2.39 -0.02 0.75 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.40 6.56 -2.39 -0.02 1.38 16 30 H 0.03 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.09 4.45 6.08 -2.39 -0.01 4.44 16 32 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -63.94 280.51 3.25 -60.69 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.09 Total: 3.29 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 3.98 Total: -14.91 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.80 Total: -83.62 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.04 Total: -10.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.94 3.25 -60.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327040407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.533 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds