Wall clock time and date at job start Thu Apr 9 2020 11:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48599 * 111.00119 * 2 1 4 4 C 1.54490 * 104.60653 * 201.19708 * 3 2 1 5 5 C 1.53819 * 104.89997 * 23.78863 * 4 3 2 6 6 C 1.48670 * 110.99815 * 244.49678 * 2 1 3 7 7 C 1.52491 * 110.20092 * 240.94533 * 5 4 3 8 8 C 1.53125 * 109.65139 * 178.09399 * 7 5 4 9 9 C 1.52712 * 109.36976 * 60.36746 * 8 7 5 10 10 N 1.46930 * 109.10606 * 305.11197 * 9 8 7 11 11 C 1.36937 * 120.67131 * 234.01475 * 10 9 8 12 12 H 1.08005 * 119.99212 * 152.18316 * 11 10 9 13 13 C 1.38803 * 120.00558 * 332.17798 * 11 10 9 14 14 N 1.31624 * 120.00041 * 335.03172 * 13 11 10 15 15 Si 1.86798 * 120.00256 * 155.02297 * 13 11 10 16 16 H 1.48505 * 109.46835 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47598 * 240.00224 * 15 13 11 18 18 H 1.48505 * 109.47022 * 119.99897 * 15 13 11 19 19 C 1.47019 * 118.64840 * 53.74688 * 10 9 8 20 20 H 1.09001 * 109.47123 * 60.12143 * 1 2 3 21 21 H 1.09002 * 109.47101 * 180.12384 * 1 2 3 22 22 H 1.09004 * 109.46919 * 300.12567 * 1 2 3 23 23 H 1.09007 * 110.40602 * 82.41661 * 3 2 1 24 24 H 1.08999 * 110.41027 * 319.98385 * 3 2 1 25 25 H 1.09000 * 110.35833 * 264.92797 * 4 3 2 26 26 H 1.09002 * 110.44272 * 142.69181 * 4 3 2 27 27 H 1.08992 * 110.43102 * 39.90859 * 6 2 1 28 28 H 1.09005 * 110.42730 * 277.42007 * 6 2 1 29 29 H 1.08997 * 109.44582 * 298.14901 * 7 5 4 30 30 H 1.09002 * 109.44416 * 58.04423 * 7 5 4 31 31 H 1.09004 * 109.50144 * 180.45060 * 8 7 5 32 32 H 1.09005 * 109.50079 * 300.55910 * 8 7 5 33 33 H 1.09002 * 109.49304 * 185.19526 * 9 8 7 34 34 H 1.09002 * 109.40546 * 64.97898 * 9 8 7 35 35 H 0.96997 * 119.99930 * 354.24942 * 14 13 11 36 36 H 1.09003 * 109.57535 * 67.33669 * 19 10 9 37 37 H 1.09001 * 109.57556 * 187.58680 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 6 3.4425 1.2515 -0.5405 5 6 3.4358 -0.0490 -1.3620 6 6 2.0018 -0.5976 -1.2527 7 6 4.4272 -1.0478 -0.7748 8 6 4.3761 -2.3538 -1.5726 9 6 4.7494 -2.0740 -3.0267 10 7 3.8712 -1.0209 -3.5546 11 6 3.1540 -1.2204 -4.7039 12 1 2.2215 -0.6972 -4.8561 13 6 3.6255 -2.0948 -5.6733 14 7 4.9140 -2.3497 -5.7590 15 14 2.4316 -2.9099 -6.8563 16 1 1.0493 -2.4597 -6.5529 17 1 2.5162 -4.3849 -6.7071 18 1 2.7800 -2.5324 -8.2497 19 6 3.7736 0.2491 -2.8204 20 1 -0.3633 0.5119 -0.8911 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3633 0.5158 0.8889 23 1 2.0120 1.7904 1.0127 24 1 1.4074 2.0225 -0.6569 25 1 4.1512 1.1755 0.2841 26 1 3.6920 2.1006 -1.1769 27 1 1.4067 -0.2800 -2.1088 28 1 2.0150 -1.6851 -1.1798 29 1 5.4335 -0.6319 -0.8240 30 1 4.1683 -1.2476 0.2650 31 1 5.0798 -3.0686 -1.1460 32 1 3.3679 -2.7661 -1.5314 33 1 4.6246 -2.9827 -3.6156 34 1 5.7869 -1.7437 -3.0772 35 1 5.5425 -1.8649 -5.2015 36 1 4.7262 0.7762 -2.8742 37 1 2.9897 0.8658 -3.2601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595506708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:18 Heat of formation + Delta-G solvation = 18.919230 kcal Electronic energy + Delta-G solvation = -16672.648909 eV Core-core repulsion = 14256.930242 eV Total energy + Delta-G solvation = -2415.718667 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62928 -36.41244 -33.41142 -31.44159 -30.33190 -28.70817 -26.41594 -25.09791 -23.70162 -22.29921 -21.09048 -20.17995 -17.95261 -17.27854 -15.54482 -15.27354 -14.32344 -14.23195 -13.75658 -13.59409 -13.42901 -13.04741 -12.94078 -12.56192 -12.11760 -11.64301 -11.37040 -11.23023 -11.11662 -10.88177 -10.70624 -10.49763 -10.30677 -10.08003 -9.94156 -9.80261 -9.55707 -9.19103 -8.33666 -8.25104 -6.82150 -6.03080 -3.18896 3.51672 3.54672 3.67699 4.31152 4.60715 4.92287 4.98294 5.22004 5.33413 5.45133 5.50843 5.57956 5.60661 5.72693 5.79989 5.87128 5.94722 6.06029 6.12976 6.19492 6.22498 6.26180 6.40945 6.44558 6.55682 6.65495 6.79368 6.82113 6.88502 7.13466 7.19036 7.25244 7.29240 8.03212 8.61472 9.16117 9.88780 10.34732 11.25133 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.009144 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.947962 B = 3061.436765 C = 3441.923614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.034 3.966 4 C -0.116 4.116 5 C -0.076 4.076 6 C 0.056 3.944 7 C -0.090 4.090 8 C -0.140 4.140 9 C 0.150 3.850 10 N -0.597 5.597 11 C -0.345 4.345 12 H 0.053 0.947 13 C -0.025 4.025 14 N -0.917 5.917 15 Si 1.067 2.933 16 H -0.293 1.293 17 H -0.290 1.290 18 H -0.294 1.294 19 C 0.162 3.838 20 H 0.026 0.974 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.270 0.730 36 H 0.016 0.984 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 4.761 10.819 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.095 4.095 4 C -0.154 4.154 5 C -0.078 4.078 6 C -0.071 4.071 7 C -0.128 4.128 8 C -0.179 4.179 9 C 0.024 3.976 10 N -0.320 5.320 11 C -0.474 4.474 12 H 0.071 0.929 13 C -0.227 4.227 14 N -0.558 5.558 15 Si 0.897 3.103 16 H -0.219 1.219 17 H -0.217 1.217 18 H -0.222 1.222 19 C 0.035 3.965 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.615 3.352 10.021 11.530 hybrid contribution -0.250 1.651 0.522 1.750 sum -4.864 5.003 10.543 12.643 Atomic orbital electron populations 1.22462 0.88852 1.01911 1.00160 1.65434 1.07468 1.14903 1.36688 1.23095 0.95736 0.90441 1.00183 1.22355 0.95952 0.97892 0.99229 1.21406 0.94904 0.94149 0.97358 1.23099 0.94412 1.00337 0.89269 1.21311 0.97722 0.95557 0.98171 1.22071 1.01072 0.96258 0.98471 1.20848 0.92023 0.93580 0.91172 1.44097 1.52800 1.09500 1.25644 1.19970 1.01913 1.29770 0.95759 0.92884 1.25788 0.98728 1.00411 0.97763 1.70709 1.01115 1.44678 1.39285 0.83508 0.74469 0.76618 0.75685 1.21935 1.21679 1.22173 1.20902 0.97737 0.88999 0.88826 0.95589 0.91501 0.91927 0.90872 0.94290 0.91381 0.91508 0.93651 0.89865 0.93035 0.92768 0.93194 0.92189 0.90414 0.96838 0.91944 0.96650 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.53 60.07 0.57 0.77 16 2 N -0.52 -8.04 5.66 -238.31 -1.35 -9.39 16 3 C 0.03 0.47 6.51 -2.10 -0.01 0.45 16 4 C -0.12 -1.71 6.28 -25.52 -0.16 -1.87 16 5 C -0.08 -1.34 0.68 -154.04 -0.11 -1.45 16 6 C 0.06 1.00 5.24 -2.36 -0.01 0.99 16 7 C -0.09 -1.58 4.48 -26.93 -0.12 -1.70 16 8 C -0.14 -2.71 5.86 -26.81 -0.16 -2.87 16 9 C 0.15 3.54 4.65 -3.96 -0.02 3.53 16 10 N -0.60 -14.93 2.69 -172.86 -0.46 -15.40 16 11 C -0.34 -9.62 9.49 -15.06 -0.14 -9.77 16 12 H 0.05 1.50 7.94 -52.48 -0.42 1.08 16 13 C -0.02 -0.71 4.69 -17.43 -0.08 -0.79 16 14 N -0.92 -27.64 12.40 55.49 0.69 -26.95 16 15 Si 1.07 25.55 29.99 -169.99 -5.10 20.45 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C 0.16 3.45 4.89 -3.94 -0.02 3.43 16 20 H 0.03 0.34 7.97 -51.93 -0.41 -0.07 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.53 7.97 -51.93 -0.41 0.12 16 25 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 26 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 27 H 0.05 0.89 7.49 -51.93 -0.39 0.51 16 28 H 0.08 1.60 5.88 -51.93 -0.31 1.30 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.20 6.20 -51.93 -0.32 0.88 16 33 H 0.08 2.07 6.28 -51.93 -0.33 1.74 16 34 H 0.01 0.33 7.89 -51.93 -0.41 -0.08 16 35 H 0.27 8.20 6.73 -40.82 -0.27 7.92 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.11 7.77 -51.93 -0.40 0.70 16 LS Contribution 278.87 15.07 4.20 4.20 Total: -1.00 -29.57 278.87 -8.51 -38.07 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.23 Total: -1.72 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -0.26 Total: -9.27 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -1.13 Total: -51.74 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.10 Total: 20.45 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.57 -8.51 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595506708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.994 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds