Wall clock time and date at job start Thu Apr 9 2020 11:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48599 * 111.00119 * 2 1 4 4 C 1.54490 * 104.60653 * 201.19708 * 3 2 1 5 5 C 1.53819 * 104.89997 * 23.78863 * 4 3 2 6 6 C 1.48670 * 110.99815 * 244.49678 * 2 1 3 7 7 C 1.52491 * 110.20092 * 240.94533 * 5 4 3 8 8 C 1.53125 * 109.65139 * 178.09399 * 7 5 4 9 9 C 1.52712 * 109.36976 * 60.36746 * 8 7 5 10 10 N 1.46930 * 109.10606 * 305.11197 * 9 8 7 11 11 C 1.36937 * 120.67131 * 234.01475 * 10 9 8 12 12 H 1.08005 * 119.99212 * 152.18316 * 11 10 9 13 13 C 1.38803 * 120.00558 * 332.17798 * 11 10 9 14 14 N 1.31624 * 120.00041 * 335.03172 * 13 11 10 15 15 Si 1.86798 * 120.00256 * 155.02297 * 13 11 10 16 16 H 1.48505 * 109.46835 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47598 * 240.00224 * 15 13 11 18 18 H 1.48505 * 109.47022 * 119.99897 * 15 13 11 19 19 C 1.47019 * 118.64840 * 53.74688 * 10 9 8 20 20 H 1.09001 * 109.47123 * 60.12143 * 1 2 3 21 21 H 1.09002 * 109.47101 * 180.12384 * 1 2 3 22 22 H 1.09004 * 109.46919 * 300.12567 * 1 2 3 23 23 H 1.09007 * 110.40602 * 82.41661 * 3 2 1 24 24 H 1.08999 * 110.41027 * 319.98385 * 3 2 1 25 25 H 1.09000 * 110.35833 * 264.92797 * 4 3 2 26 26 H 1.09002 * 110.44272 * 142.69181 * 4 3 2 27 27 H 1.08992 * 110.43102 * 39.90859 * 6 2 1 28 28 H 1.09005 * 110.42730 * 277.42007 * 6 2 1 29 29 H 1.08997 * 109.44582 * 298.14901 * 7 5 4 30 30 H 1.09002 * 109.44416 * 58.04423 * 7 5 4 31 31 H 1.09004 * 109.50144 * 180.45060 * 8 7 5 32 32 H 1.09005 * 109.50079 * 300.55910 * 8 7 5 33 33 H 1.09002 * 109.49304 * 185.19526 * 9 8 7 34 34 H 1.09002 * 109.40546 * 64.97898 * 9 8 7 35 35 H 0.96997 * 119.99930 * 354.24942 * 14 13 11 36 36 H 1.09003 * 109.57535 * 67.33669 * 19 10 9 37 37 H 1.09001 * 109.57556 * 187.58680 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3873 0.0000 4 6 3.4425 1.2515 -0.5405 5 6 3.4358 -0.0490 -1.3620 6 6 2.0018 -0.5976 -1.2527 7 6 4.4272 -1.0478 -0.7748 8 6 4.3761 -2.3538 -1.5726 9 6 4.7494 -2.0740 -3.0267 10 7 3.8712 -1.0209 -3.5546 11 6 3.1540 -1.2204 -4.7039 12 1 2.2215 -0.6972 -4.8561 13 6 3.6255 -2.0948 -5.6733 14 7 4.9140 -2.3497 -5.7590 15 14 2.4316 -2.9099 -6.8563 16 1 1.0493 -2.4597 -6.5529 17 1 2.5162 -4.3849 -6.7071 18 1 2.7800 -2.5324 -8.2497 19 6 3.7736 0.2491 -2.8204 20 1 -0.3633 0.5119 -0.8911 21 1 -0.3633 -1.0277 0.0022 22 1 -0.3633 0.5158 0.8889 23 1 2.0120 1.7904 1.0127 24 1 1.4074 2.0225 -0.6569 25 1 4.1512 1.1755 0.2841 26 1 3.6920 2.1006 -1.1769 27 1 1.4067 -0.2800 -2.1088 28 1 2.0150 -1.6851 -1.1798 29 1 5.4335 -0.6319 -0.8240 30 1 4.1683 -1.2476 0.2650 31 1 5.0798 -3.0686 -1.1460 32 1 3.3679 -2.7661 -1.5314 33 1 4.6246 -2.9827 -3.6156 34 1 5.7869 -1.7437 -3.0772 35 1 5.5425 -1.8649 -5.2015 36 1 4.7262 0.7762 -2.8742 37 1 2.9897 0.8658 -3.2601 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595506708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:18 Heat of formation + Delta-G solvation = -0.178730 kcal Electronic energy + Delta-G solvation = -16673.477058 eV Core-core repulsion = 14256.930242 eV Total energy + Delta-G solvation = -2416.546816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06092 -38.03434 -35.17288 -32.93535 -32.24966 -30.10273 -27.73956 -27.08723 -25.08874 -24.05106 -22.60660 -21.61397 -19.60440 -19.21366 -16.88380 -16.61590 -16.21590 -15.90891 -15.47523 -15.15110 -14.80255 -14.60549 -14.50583 -13.97850 -13.60734 -13.19276 -12.95857 -12.74256 -12.60825 -12.35718 -12.29101 -11.96809 -11.91369 -11.85192 -11.71778 -11.42696 -11.10949 -11.03786 -10.44626 -9.49009 -8.90935 -8.24346 -5.39352 1.55549 1.63540 1.79264 2.63421 3.11002 3.20320 3.47569 3.67784 3.80555 3.89533 4.24206 4.27120 4.29222 4.43045 4.48344 4.54053 4.58721 4.70400 4.74604 4.79995 4.84389 4.90548 4.94804 4.96989 5.07363 5.11995 5.24119 5.26185 5.31976 5.41805 5.57944 5.81925 5.86180 6.08201 6.39113 7.06050 7.78140 8.23466 8.99752 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.009144 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.947962 B = 3061.436765 C = 3441.923614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.523 5.523 3 C 0.035 3.965 4 C -0.111 4.111 5 C -0.073 4.073 6 C 0.064 3.936 7 C -0.083 4.083 8 C -0.130 4.130 9 C 0.156 3.844 10 N -0.613 5.613 11 C -0.348 4.348 12 H 0.044 0.956 13 C -0.076 4.076 14 N -0.943 5.943 15 Si 1.115 2.885 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.290 1.290 19 C 0.162 3.838 20 H 0.021 0.979 21 H 0.066 0.934 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.013 0.987 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 5.423 12.747 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.247 5.247 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.064 4.064 7 C -0.121 4.121 8 C -0.169 4.169 9 C 0.030 3.970 10 N -0.338 5.338 11 C -0.478 4.478 12 H 0.062 0.938 13 C -0.272 4.272 14 N -0.585 5.585 15 Si 0.940 3.060 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.217 1.217 19 C 0.036 3.964 20 H 0.039 0.961 21 H 0.085 0.915 22 H 0.106 0.894 23 H 0.118 0.882 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.491 4.040 11.985 13.788 hybrid contribution 0.016 1.505 -0.054 1.506 sum -5.475 5.545 11.931 14.250 Atomic orbital electron populations 1.22536 0.87468 1.02346 1.01132 1.65438 1.08859 1.15896 1.34498 1.23178 0.94793 0.89560 1.01715 1.22345 0.97258 0.95995 0.99309 1.21301 0.94883 0.96188 0.95113 1.22870 0.94353 0.99467 0.89710 1.21277 0.97970 0.94081 0.98726 1.21941 1.01059 0.98138 0.95725 1.20716 0.91232 0.91672 0.93354 1.44305 1.52721 1.11282 1.25449 1.20160 1.01616 1.29328 0.96662 0.93807 1.27111 0.99340 1.01233 0.99554 1.70833 1.01794 1.45649 1.40219 0.82856 0.73369 0.75821 0.73920 1.20124 1.21265 1.21735 1.21012 0.97141 0.87326 0.90904 0.96078 0.91484 0.89380 0.88204 0.94185 0.89542 0.91018 0.96332 0.91494 0.92415 0.90571 0.91002 0.92933 0.93989 0.98022 0.93567 0.96910 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.53 127.69 1.22 1.55 16 2 N -0.52 -14.77 5.66 -907.89 -5.14 -19.91 16 3 C 0.04 0.86 6.51 86.48 0.56 1.42 16 4 C -0.11 -2.93 6.28 31.38 0.20 -2.73 16 5 C -0.07 -2.47 0.68 -51.88 -0.04 -2.51 16 6 C 0.06 2.23 5.24 86.27 0.45 2.68 16 7 C -0.08 -2.72 4.48 30.47 0.14 -2.59 16 8 C -0.13 -4.94 5.86 30.54 0.18 -4.76 16 9 C 0.16 7.55 4.65 86.20 0.40 7.95 16 10 N -0.61 -31.37 2.69 -700.82 -1.88 -33.25 16 11 C -0.35 -19.87 9.49 84.03 0.80 -19.08 16 12 H 0.04 2.54 7.94 -2.91 -0.02 2.52 16 13 C -0.08 -4.41 4.69 84.86 0.40 -4.02 16 14 N -0.94 -58.44 12.40 21.65 0.27 -58.17 16 15 Si 1.12 52.19 29.99 68.60 2.06 54.25 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 C 0.16 6.92 4.89 86.16 0.42 7.34 16 20 H 0.02 0.52 7.97 -2.39 -0.02 0.50 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 23 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.04 0.97 7.97 -2.39 -0.02 0.96 16 25 H 0.09 2.01 7.70 -2.39 -0.02 1.99 16 26 H 0.07 1.84 7.69 -2.39 -0.02 1.82 16 27 H 0.02 0.73 7.49 -2.39 -0.02 0.72 16 28 H 0.07 2.55 5.88 -2.38 -0.01 2.53 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.05 2.08 6.20 -2.38 -0.01 2.07 16 33 H 0.04 2.31 6.28 -2.39 -0.01 2.30 16 34 H 0.00 0.09 7.89 -2.39 -0.02 0.07 16 35 H 0.25 16.10 6.73 -92.71 -0.62 15.47 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.04 1.74 7.77 -2.39 -0.02 1.72 16 Total: -1.00 -64.59 278.87 1.20 -63.40 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.16 Total: 8.42 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.73 Total: -14.74 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -6.75 Total: -111.32 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.06 Total: 54.25 kcal Total: -64.59 1.20 -63.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595506708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.221 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds