Wall clock time and date at job start Thu Apr 9 2020 11:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33001 * 119.99770 * 2 1 4 4 C 1.47089 * 120.00164 * 0.02562 * 3 2 1 5 5 O 1.21621 * 120.00460 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00229 * 179.97438 * 4 3 2 7 7 C 1.47422 * 125.64926 * 0.02615 * 6 4 3 8 8 C 1.54909 * 104.83564 * 155.82503 * 7 6 4 9 9 C 1.55152 * 101.58032 * 37.00513 * 8 7 6 10 10 O 1.42903 * 110.72100 * 82.86680 * 9 8 7 11 11 C 1.50703 * 110.71825 * 205.95483 * 9 8 7 12 12 H 1.07993 * 120.00249 * 357.56786 * 11 9 8 13 13 C 1.37877 * 119.99923 * 177.55974 * 11 9 8 14 14 N 1.31521 * 120.00053 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00236 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.46982 * 59.99775 * 15 13 11 17 17 H 1.48496 * 109.47392 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46775 * 300.00303 * 15 13 11 19 19 C 1.47027 * 125.65206 * 179.97438 * 6 4 3 20 20 H 1.08999 * 109.46560 * 299.99483 * 1 2 3 21 21 H 1.08995 * 109.47606 * 59.99811 * 1 2 3 22 22 H 1.09001 * 109.46692 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00296 * 180.02562 * 2 1 3 24 24 H 1.08006 * 119.99419 * 179.97438 * 3 2 1 25 25 H 1.09002 * 110.36847 * 36.97758 * 7 6 4 26 26 H 1.09005 * 110.45737 * 274.70993 * 7 6 4 27 27 H 1.09005 * 111.00113 * 278.93173 * 8 7 6 28 28 H 1.08998 * 111.03822 * 155.09465 * 8 7 6 29 29 H 0.96700 * 114.00311 * 179.97438 * 10 9 8 30 30 H 0.97000 * 119.99959 * 179.97438 * 14 13 11 31 31 H 1.09003 * 109.87825 * 61.68763 * 19 6 4 32 32 H 1.09001 * 109.88209 * 300.52818 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4365 2.4257 0.0006 5 8 0.2203 2.4257 0.0006 6 7 2.1103 3.5929 0.0011 7 6 3.5773 3.7381 0.0006 8 6 3.8373 5.1370 -0.6118 9 6 2.6574 5.9573 -0.0267 10 8 2.9625 6.4109 1.2936 11 6 2.3204 7.1207 -0.9234 12 1 2.9061 7.3051 -1.8118 13 6 1.2643 7.9496 -0.6097 14 7 0.5512 7.7253 0.4724 15 14 0.8461 9.3913 -1.7215 16 1 0.5172 8.8897 -3.0799 17 1 -0.3217 10.1218 -1.1668 18 1 2.0111 10.3089 -1.8013 19 6 1.5041 4.9324 0.0012 20 1 -0.3632 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 2.0470 -0.9353 -0.0004 24 1 3.2520 1.1518 0.0004 25 1 4.0350 2.9635 -0.6147 26 1 3.9651 3.6915 1.0183 27 1 3.7874 5.1025 -1.7002 28 1 4.7947 5.5380 -0.2792 29 1 2.2570 6.9293 1.7043 30 1 -0.1916 8.3087 0.6934 31 1 0.9080 5.0694 0.9034 32 1 0.8772 5.0556 -0.8820 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013802.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:12 Heat of formation + Delta-G solvation = -68.737941 kcal Electronic energy + Delta-G solvation = -15879.145986 eV Core-core repulsion = 13226.074462 eV Total energy + Delta-G solvation = -2653.071524 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.42790 -37.39244 -34.33817 -33.75365 -32.18702 -30.17159 -28.13848 -27.21614 -25.03077 -22.85429 -20.96072 -19.52413 -17.90063 -17.24670 -16.63197 -15.43697 -14.86270 -14.58342 -14.40558 -13.82232 -13.38335 -12.94287 -12.79765 -12.49258 -12.11711 -11.85557 -11.72000 -11.48837 -11.28569 -11.02377 -10.76739 -10.62779 -10.52379 -10.16172 -9.31850 -9.23520 -9.05845 -8.66580 -8.30365 -7.78172 -6.28458 -4.37478 1.69234 3.22608 3.28218 3.30098 3.77061 3.80502 4.27204 4.93987 5.01456 5.14969 5.41475 5.47497 5.74428 5.78509 5.84116 6.03924 6.05875 6.10850 6.29876 6.52062 6.56766 6.70241 6.79978 6.88281 7.05291 7.29416 7.40549 7.73493 8.00702 8.30480 8.65191 8.82811 9.30838 9.40845 10.79183 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.039598 B = 0.007608 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.932321 B = 3679.518887 C = 4025.588049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.214 4.214 4 C 0.544 3.456 5 O -0.552 6.552 6 N -0.608 5.608 7 C 0.102 3.898 8 C -0.119 4.119 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.104 3.896 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.384 0.616 30 H 0.271 0.729 31 H 0.064 0.936 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -9.913 -0.879 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 C -0.235 4.235 4 C 0.335 3.665 5 O -0.433 6.433 6 N -0.341 5.341 7 C -0.021 4.021 8 C -0.157 4.157 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.017 4.017 20 H 0.099 0.901 21 H 0.099 0.901 22 H 0.064 0.936 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.236 0.764 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.768 -10.192 -0.884 10.902 hybrid contribution -0.670 1.074 -0.432 1.337 sum 3.098 -9.118 -1.315 9.719 Atomic orbital electron populations 1.21015 0.91995 1.00281 1.04455 1.23658 0.97342 0.96856 0.92055 1.22753 1.00164 0.92902 1.07691 1.18248 0.87016 0.83487 0.77741 1.90742 1.13597 1.87301 1.51662 1.48709 1.07623 1.06834 1.70897 1.22313 0.81026 0.98393 1.00371 1.22761 1.00066 0.93010 0.99827 1.19486 0.87813 0.90116 0.81889 1.86079 1.47805 1.74469 1.31222 1.21485 1.14928 1.11605 1.09678 0.91569 1.25085 0.95127 0.97781 0.95321 1.69639 1.19959 1.38887 1.24941 0.86448 0.77943 0.81810 0.80641 1.20032 1.21050 1.19965 1.22958 0.98119 0.78906 1.01764 0.90133 0.90122 0.93553 0.86238 0.85989 0.91999 0.91782 0.90551 0.90536 0.76439 0.91888 0.91778 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.45 36.00 0.30 -1.39 16 2 C -0.08 -1.03 10.35 -36.13 -0.37 -1.40 16 3 C -0.21 -3.25 9.46 -37.81 -0.36 -3.60 16 4 C 0.54 11.01 7.76 -12.67 -0.10 10.91 16 5 O -0.55 -12.69 13.40 5.26 0.07 -12.62 16 6 N -0.61 -12.82 3.33 -171.91 -0.57 -13.40 16 7 C 0.10 1.82 6.52 -2.53 -0.02 1.80 16 8 C -0.12 -2.37 6.22 -24.59 -0.15 -2.53 16 9 C 0.25 6.04 0.86 -89.94 -0.08 5.96 16 10 O -0.59 -14.91 13.09 -35.23 -0.46 -15.37 16 11 C -0.54 -14.15 8.12 -34.44 -0.28 -14.43 16 12 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 13 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 14 N -0.90 -24.02 10.97 55.43 0.61 -23.41 16 15 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.10 2.57 5.39 -3.07 -0.02 2.55 16 20 H 0.08 1.29 7.22 -51.93 -0.37 0.91 16 21 H 0.08 1.28 7.22 -51.93 -0.37 0.91 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 24 H 0.12 1.54 6.87 -52.48 -0.36 1.18 16 25 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.38 10.05 7.17 45.56 0.33 10.38 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.06 1.73 8.01 -51.93 -0.42 1.31 16 32 H 0.06 1.74 7.82 -51.93 -0.41 1.34 16 LS Contribution 268.10 15.07 4.04 4.04 Total: -1.00 -29.10 268.10 -6.13 -35.23 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.63 Total: 10.42 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.16 Total: -0.38 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.04 Total: -36.81 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.39 Total: -27.99 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.10 -6.13 -35.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013802.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.512 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds