Wall clock time and date at job start Thu Apr 9 2020 11:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 O 1.42903 * 109.46726 * 294.99609 * 3 2 1 6 6 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 7 7 C 1.35357 * 126.75269 * 124.99476 * 6 3 2 8 8 N 1.35313 * 106.17405 * 180.02562 * 7 6 3 9 9 C 1.46497 * 125.86200 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46931 * 125.00351 * 9 8 7 11 11 C 1.50697 * 109.47163 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00362 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99769 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99911 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00329 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47291 * 89.99800 * 15 13 11 17 17 H 1.48496 * 109.47184 * 209.99605 * 15 13 11 18 18 H 1.48496 * 109.46909 * 330.00016 * 15 13 11 19 19 N 1.28713 * 108.26508 * 0.02562 * 8 7 6 20 20 N 1.28632 * 110.17963 * 359.71976 * 19 8 7 21 21 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 22 22 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 0.96700 * 114.00234 * 300.00043 * 5 3 2 27 27 H 1.07996 * 126.90708 * 359.97146 * 7 6 3 28 28 H 1.09003 * 109.47051 * 244.99928 * 9 8 7 29 29 H 1.08995 * 109.47792 * 5.00556 * 9 8 7 30 30 H 1.09003 * 109.46908 * 299.99665 * 10 9 8 31 31 H 1.08998 * 109.47111 * 59.99860 * 10 9 8 32 32 H 0.96996 * 119.99796 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5419 1.4444 0.1239 7 6 4.4228 2.0413 -0.7127 8 7 5.6530 1.7810 -0.2128 9 6 6.9247 2.2269 -0.7872 10 6 7.7225 2.9910 0.2714 11 6 9.0310 3.4491 -0.3193 12 1 9.2696 3.2188 -1.3470 13 6 9.9231 4.1633 0.4522 14 7 11.0653 4.5627 -0.0632 15 14 9.5101 4.5625 2.2297 16 1 10.0042 3.4730 3.1094 17 1 10.1596 5.8415 2.6135 18 1 8.0382 4.6903 2.3791 19 7 5.5138 1.0736 0.8535 20 7 4.2666 0.8602 1.0847 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.0142 1.6541 -2.0139 27 1 4.1905 2.6100 -1.6009 28 1 7.4974 1.3605 -1.1185 29 1 6.7302 2.8805 -1.6375 30 1 7.1499 3.8574 0.6026 31 1 7.9171 2.3374 1.1217 32 1 11.6930 5.0649 0.4797 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849141431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:17 Heat of formation + Delta-G solvation = 27.807292 kcal Electronic energy + Delta-G solvation = -15080.816728 eV Core-core repulsion = 12464.224471 eV Total energy + Delta-G solvation = -2616.592257 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.97446 -37.93794 -35.18821 -33.10148 -32.69409 -30.89600 -30.40814 -26.51607 -25.73564 -22.53107 -21.96338 -21.35107 -20.22585 -17.68042 -16.82856 -16.15544 -15.94981 -15.57142 -15.01528 -14.34418 -14.03850 -13.74000 -13.43264 -12.84588 -12.62051 -12.26126 -11.97571 -11.76581 -11.32547 -11.13349 -11.07177 -10.77082 -10.71581 -10.33979 -10.27574 -10.01995 -9.56114 -9.49173 -8.93603 -8.72331 -6.23996 -4.26718 1.93041 2.71106 2.81241 3.23223 3.30625 3.35577 4.14372 4.30609 4.35738 4.78030 4.92130 4.99437 5.08473 5.16386 5.29951 5.37928 5.60464 5.65434 5.67592 5.84613 5.97471 6.03333 6.13713 6.15694 6.29373 6.76220 7.00240 7.03582 7.41973 7.50250 8.24090 8.74833 8.82280 9.36008 10.88068 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.059037 B = 0.005245 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.161007 B = 5337.350995 C = 5492.940642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.113 0.887 5 O -0.554 6.554 6 C -0.074 4.074 7 C -0.043 4.043 8 N -0.273 5.273 9 C 0.120 3.880 10 C -0.020 4.020 11 C -0.532 4.532 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 N -0.076 5.076 20 N -0.276 5.276 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.375 0.625 27 H 0.187 0.813 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.024 0.976 31 H 0.032 0.968 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.418 -6.224 -2.902 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.140 3.860 4 H 0.130 0.870 5 O -0.358 6.358 6 C -0.214 4.214 7 C -0.196 4.196 8 N -0.066 5.066 9 C 0.001 3.999 10 C -0.059 4.059 11 C -0.570 4.570 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.531 5.531 15 Si 0.706 3.294 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.191 1.191 19 N -0.056 5.056 20 N -0.143 5.143 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.222 0.778 27 H 0.204 0.796 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.776 -6.426 -1.321 18.013 hybrid contribution -0.004 0.553 -0.406 0.686 sum -16.780 -5.873 -1.727 17.861 Atomic orbital electron populations 1.21720 0.95029 1.01460 1.02320 1.22152 0.96544 0.96335 1.03525 1.19924 0.84884 0.93533 0.87704 0.86981 1.86594 1.76087 1.57520 1.15557 1.22714 0.98446 1.04110 0.96134 1.23295 0.84385 1.07482 1.04408 1.47955 1.08981 1.32445 1.17189 1.22542 0.78295 1.00606 0.98413 1.19869 0.95911 0.95525 0.94548 1.20781 0.99690 1.36243 1.00323 0.90433 1.24913 0.94556 0.94724 0.98477 1.69882 1.08612 1.37507 1.37092 0.86784 0.79232 0.78253 0.85159 1.19803 1.21029 1.19113 1.78294 1.13106 1.11377 1.02832 1.74974 0.96666 1.20345 1.22267 0.92143 0.92825 0.92633 0.91773 0.90085 0.77758 0.79578 0.88538 0.88050 0.95810 0.94929 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.81 37.16 0.36 -0.86 16 2 C -0.15 -1.46 5.59 -26.73 -0.15 -1.61 16 3 C 0.20 2.29 3.52 -27.88 -0.10 2.19 16 4 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 5 O -0.55 -5.60 12.35 -35.23 -0.43 -6.03 16 6 C -0.07 -1.11 6.45 -82.77 -0.53 -1.64 16 7 C -0.04 -0.63 10.79 -17.04 -0.18 -0.82 16 8 N -0.27 -4.82 3.44 -61.26 -0.21 -5.03 16 9 C 0.12 2.16 6.39 -4.04 -0.03 2.14 16 10 C -0.02 -0.46 4.17 -27.88 -0.12 -0.58 16 11 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 12 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 15 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 19 N -0.08 -1.51 12.92 60.35 0.78 -0.73 16 20 N -0.28 -5.03 12.40 33.29 0.41 -4.61 16 21 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.38 2.54 8.86 45.56 0.40 2.94 16 27 H 0.19 2.01 7.94 -52.49 -0.42 1.59 16 28 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.10 1.58 8.07 -51.93 -0.42 1.16 16 30 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 31 H 0.03 0.78 7.55 -51.93 -0.39 0.39 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 277.72 15.07 4.19 4.19 Total: -1.00 -31.49 277.72 -4.06 -35.55 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -3.73 Total: -0.77 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.17 Total: -13.68 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 1.76 Total: -36.05 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.43 Total: -6.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.49 -4.06 -35.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849141431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.359 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds