Wall clock time and date at job start Thu Apr 9 2020 11:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47019 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46942 * 119.99856 * 3 2 1 7 7 C 1.37876 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00469 * 181.93080 * 7 2 1 9 9 C 1.50695 * 119.99674 * 1.93050 * 7 2 1 10 10 C 1.53001 * 115.55064 * 84.64275 * 9 7 2 11 11 O 1.42904 * 109.47014 * 56.90210 * 10 9 7 12 12 N 1.41601 * 114.00089 * 184.83975 * 11 10 9 13 13 C 1.34777 * 119.99647 * 185.07879 * 12 11 10 14 14 O 1.21274 * 120.00253 * 354.69824 * 13 12 11 15 15 C 1.50704 * 119.99615 * 174.69322 * 13 12 11 16 16 C 1.52997 * 117.50239 * 248.74799 * 15 13 12 17 17 C 1.53004 * 117.49828 * 180.08548 * 15 13 12 18 18 C 1.52998 * 117.50052 * 230.31573 * 9 7 2 19 19 C 1.53002 * 117.50309 * 298.97598 * 9 7 2 20 20 H 0.96997 * 120.00185 * 5.01782 * 1 2 3 21 21 H 1.09001 * 109.47722 * 296.90158 * 10 9 7 22 22 H 1.09002 * 109.47468 * 176.89511 * 10 9 7 23 23 H 0.97000 * 120.00096 * 5.07824 * 12 11 10 24 24 H 1.09004 * 115.55135 * 34.42282 * 15 13 12 25 25 H 1.09000 * 117.49622 * 359.97438 * 16 15 13 26 26 H 1.08994 * 117.49992 * 145.02239 * 16 15 13 27 27 H 1.08997 * 117.50054 * 214.98198 * 17 15 13 28 28 H 1.08996 * 117.49583 * 359.97438 * 17 15 13 29 29 H 1.09002 * 117.49765 * 215.00532 * 18 9 7 30 30 H 1.09000 * 117.49934 * 0.02562 * 18 9 7 31 31 H 1.08996 * 117.49544 * 359.97387 * 19 9 7 32 32 H 1.08992 * 117.50356 * 144.97498 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1943 0.0320 9 6 1.2518 -2.4987 -0.0428 10 6 0.8507 -2.9831 -1.4376 11 8 2.0170 -3.0995 -2.2552 12 7 1.7443 -3.4386 -3.6027 13 6 2.7597 -3.6799 -4.4554 14 8 3.9060 -3.5135 -4.0961 15 6 2.4705 -4.1567 -5.8555 16 6 2.8668 -5.5916 -6.2092 17 6 3.6660 -4.4149 -6.7749 18 6 1.6187 -3.5609 0.9954 19 6 0.2950 -2.8011 1.1122 20 1 -0.4850 0.8368 -0.0735 21 1 0.1621 -2.2674 -1.8868 22 1 0.3640 -3.9552 -1.3587 23 1 0.8268 -3.4971 -3.9119 24 1 1.5631 -3.7587 -6.3097 25 1 3.3370 -6.1906 -5.4293 26 1 2.2203 -6.1374 -6.8962 27 1 3.5448 -4.1872 -7.8339 28 1 4.6615 -4.2395 -6.3672 29 1 1.5744 -4.6048 0.6848 30 1 2.4043 -3.3159 1.7102 31 1 0.2104 -2.0565 1.9036 32 1 -0.6203 -3.3447 0.8784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853720724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:28 Heat of formation + Delta-G solvation = -2.849992 kcal Electronic energy + Delta-G solvation = -15266.511362 eV Core-core repulsion = 12616.296955 eV Total energy + Delta-G solvation = -2650.214408 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77906 -39.09545 -37.46975 -36.74018 -34.05808 -33.12603 -28.18761 -27.10334 -25.15745 -23.29036 -22.95654 -21.67306 -20.85599 -19.03419 -18.38719 -17.95365 -16.84390 -16.48636 -16.10650 -15.83703 -15.61419 -15.03324 -14.56256 -14.03727 -13.65660 -13.47545 -13.02371 -12.87271 -12.49583 -12.41090 -12.20501 -11.98367 -11.62824 -11.53246 -11.42637 -11.01065 -10.97979 -10.47112 -10.11472 -9.81199 -8.17556 -6.27614 0.96688 1.36514 1.37761 1.45895 1.46124 2.38892 2.91579 3.10471 3.28100 3.52416 3.77266 3.91699 3.99397 4.17853 4.24126 4.38572 4.44556 4.63907 4.77405 4.80716 4.91302 4.95381 5.06386 5.18140 5.26478 5.46569 5.59335 5.70779 5.94459 6.32120 6.38306 6.74193 7.30817 7.40199 8.90176 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.006983 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.683821 B = 4008.863491 C = 4561.672119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.032 3.968 3 Si 0.943 3.057 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.037 0.963 9 C 0.003 3.997 10 C 0.092 3.908 11 O -0.163 6.163 12 N -0.590 5.590 13 C 0.538 3.462 14 O -0.587 6.587 15 C -0.191 4.191 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.191 4.191 19 C -0.129 4.129 20 H 0.263 0.737 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.420 0.580 24 H 0.163 0.837 25 H 0.085 0.915 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -9.625 -12.325 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.001 3.999 10 C 0.015 3.985 11 O -0.168 6.168 12 N -0.291 5.291 13 C 0.328 3.672 14 O -0.467 6.467 15 C -0.212 4.212 16 C -0.171 4.171 17 C -0.185 4.185 18 C -0.228 4.228 19 C -0.167 4.167 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.262 0.738 24 H 0.180 0.820 25 H 0.103 0.897 26 H 0.163 0.837 27 H 0.156 0.844 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.191 -9.352 -11.894 15.177 hybrid contribution -0.166 1.277 0.436 1.360 sum -1.356 -8.075 -11.458 14.083 Atomic orbital electron populations 1.70024 1.06414 1.27636 1.49941 1.25528 0.95729 1.01397 0.94192 0.85856 0.78762 0.80018 0.78478 1.20930 1.19871 1.19699 1.20528 0.91860 0.90565 1.51460 0.94494 1.18823 1.01085 0.93966 0.85992 1.22498 0.86780 0.98084 0.91145 1.90694 1.28351 1.91946 1.05793 1.47683 1.10341 1.70858 1.00174 1.20823 0.83661 0.76310 0.86441 1.90677 1.23235 1.54119 1.78653 1.22145 1.04792 1.04424 0.89793 1.23147 1.02550 0.88380 1.02989 1.23119 0.94581 1.01276 0.99499 1.23068 0.99030 0.96457 1.04269 1.22435 0.92327 1.01009 1.00947 0.92762 0.93335 0.92269 0.73814 0.81959 0.89683 0.83729 0.84363 0.90070 0.88801 0.90719 0.91416 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.84 12.73 21.45 0.27 -50.57 16 2 C 0.03 1.81 5.43 84.65 0.46 2.27 16 3 Si 0.94 45.35 29.54 68.60 2.03 47.37 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.51 -29.34 8.61 25.60 0.22 -29.12 16 8 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 9 C 0.00 0.16 1.70 -52.93 -0.09 0.07 16 10 C 0.09 4.11 6.09 71.98 0.44 4.55 16 11 O -0.16 -7.77 10.89 -21.45 -0.23 -8.01 16 12 N -0.59 -21.14 6.38 -173.53 -1.11 -22.24 16 13 C 0.54 19.04 7.75 87.66 0.68 19.72 16 14 O -0.59 -27.45 16.67 14.32 0.24 -27.21 16 15 C -0.19 -4.01 6.19 -11.54 -0.07 -4.08 16 16 C -0.13 -2.14 10.24 30.62 0.31 -1.83 16 17 C -0.15 -2.74 10.05 30.62 0.31 -2.43 16 18 C -0.19 -8.40 9.94 30.62 0.30 -8.10 16 19 C -0.13 -5.90 9.26 30.62 0.28 -5.62 16 20 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 21 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 23 H 0.42 11.06 8.55 -92.71 -0.79 10.26 16 24 H 0.16 2.20 8.14 -2.38 -0.02 2.18 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 2.00 7.67 -2.39 -0.02 1.98 16 29 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -74.03 286.53 4.36 -69.66 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.32 Total: 15.57 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 2.85 Total: -24.57 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.83 Total: -72.81 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: 0.01 Total: -35.22 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.03 4.36 -69.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853720724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.812 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds