Wall clock time and date at job start Thu Apr 9 2020 11:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47002 * 240.00261 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47014 * 120.00226 * 3 2 1 7 7 C 1.40049 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00464 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99602 * 0.02562 * 9 7 2 11 11 N 1.34768 * 120.00215 * 180.02562 * 9 7 2 12 12 C 1.46506 * 120.00142 * 179.97438 * 11 9 7 13 13 H 1.09004 * 110.45377 * 325.70272 * 12 11 9 14 14 C 1.54477 * 110.50863 * 88.30537 * 12 11 9 15 15 O 1.44429 * 104.80540 * 94.67144 * 14 12 11 16 16 C 1.44420 * 105.27285 * 40.50541 * 15 14 12 17 17 C 1.54503 * 110.51160 * 203.09386 * 12 11 9 18 18 H 1.08996 * 110.51459 * 0.02562 * 17 12 11 19 19 C 1.53011 * 110.50831 * 122.71092 * 17 12 11 20 20 C 1.52999 * 117.49923 * 248.74715 * 19 17 12 21 21 C 1.52998 * 117.49841 * 180.08767 * 19 17 12 22 22 H 0.96996 * 119.99463 * 359.97438 * 1 2 3 23 23 H 0.97002 * 120.00385 * 0.02562 * 11 9 7 24 24 H 1.09001 * 110.37033 * 213.49799 * 14 12 11 25 25 H 1.09001 * 110.37605 * 335.83246 * 14 12 11 26 26 H 1.09008 * 110.37115 * 78.32519 * 16 15 14 27 27 H 1.09000 * 110.37201 * 200.54686 * 16 15 14 28 28 H 1.09001 * 115.54657 * 34.41731 * 19 17 12 29 29 H 1.09000 * 117.49845 * 359.97438 * 20 19 17 30 30 H 1.08995 * 117.49984 * 145.02109 * 20 19 17 31 31 H 1.09001 * 117.49837 * 214.98272 * 21 19 17 32 32 H 1.09003 * 117.49579 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9165 0.0000 13 1 0.2955 -4.8244 0.5759 14 6 0.9082 -5.3641 -1.4460 15 8 1.9871 -6.2594 -1.7931 16 6 2.2211 -7.0507 -0.6078 17 6 2.0988 -6.0507 0.5675 18 1 3.0798 -5.6675 0.8481 19 6 1.4168 -6.7110 1.7677 20 6 2.0475 -6.4960 3.1450 21 6 2.1566 -7.8591 2.4571 22 1 -0.4849 0.8401 0.0004 23 1 2.9190 -3.6478 -0.0002 24 1 -0.0469 -5.8878 -1.4856 25 1 0.8985 -4.5041 -2.1156 26 1 1.4672 -7.8330 -0.5188 27 1 3.2192 -7.4879 -0.6343 28 1 0.3298 -6.7718 1.7158 29 1 2.9484 -5.8847 3.1961 30 1 1.3754 -6.4159 3.9993 31 1 1.5562 -8.6752 2.8591 32 1 3.1290 -8.1444 2.0554 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885675722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:40 Heat of formation + Delta-G solvation = -64.955023 kcal Electronic energy + Delta-G solvation = -15646.131578 eV Core-core repulsion = 12993.224094 eV Total energy + Delta-G solvation = -2652.907484 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.63061 -36.97889 -36.62107 -33.18743 -32.25642 -30.01439 -28.14324 -25.95000 -23.35478 -22.24249 -21.71014 -20.02869 -19.36014 -17.27056 -16.11106 -15.79518 -15.24263 -15.15703 -14.76281 -14.10092 -13.90784 -13.42048 -12.60696 -12.29621 -12.04446 -11.79845 -11.49780 -11.27238 -11.17865 -11.05849 -10.83437 -10.60858 -10.45153 -10.26295 -10.11010 -9.87111 -9.48535 -8.84457 -7.63512 -7.49950 -6.19077 -4.64649 3.16064 3.20871 3.22817 3.79914 4.09829 4.29740 4.55017 4.59790 4.83210 4.94705 4.98560 5.12926 5.38639 5.40590 5.56996 5.62581 5.68615 5.83776 5.90263 5.92729 5.97885 6.02871 6.14911 6.31522 6.43213 6.52984 7.13053 7.43152 7.91620 8.09188 8.32698 9.02080 9.51980 10.59118 10.77373 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.006945 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.915321 B = 4030.461323 C = 4354.818100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.755 5.755 12 C 0.135 3.865 13 H 0.091 0.909 14 C 0.034 3.966 15 O -0.379 6.379 16 C 0.053 3.947 17 C -0.099 4.099 18 H 0.086 0.914 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.183 4.183 22 H 0.269 0.731 23 H 0.381 0.619 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.873 -11.774 2.852 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.409 5.409 12 C 0.028 3.972 13 H 0.109 0.891 14 C -0.045 4.045 15 O -0.298 6.298 16 C -0.024 4.024 17 C -0.119 4.119 18 H 0.104 0.896 19 C -0.157 4.157 20 C -0.211 4.211 21 C -0.220 4.220 22 H 0.079 0.921 23 H 0.213 0.787 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.891 -11.659 2.648 12.573 hybrid contribution 0.791 0.812 0.247 1.160 sum 4.682 -10.847 2.895 12.164 Atomic orbital electron populations 1.70011 1.07043 1.27371 1.35258 1.25702 0.94619 1.00267 0.92596 0.86434 0.79825 0.81038 0.79453 1.19259 1.20553 1.19313 1.20853 0.93577 0.89409 1.54382 0.91493 1.18223 0.87226 0.82418 0.76205 1.90596 1.14024 1.86807 1.54998 1.46181 1.08415 1.04229 1.82106 1.21824 0.96186 0.84820 0.94397 0.89059 1.24036 0.89231 0.93209 0.97979 1.89100 1.54558 1.52040 1.34068 1.23410 1.01114 0.93610 0.84259 1.22467 0.99726 0.95565 0.94100 0.89560 1.22215 0.98917 1.01688 0.92877 1.22983 1.03198 0.99180 0.95765 1.22953 1.02147 0.92031 1.04848 0.92056 0.78710 0.92608 0.88487 0.92390 0.89683 0.87570 0.88669 0.88883 0.89000 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.04 11.83 55.55 0.66 -22.39 16 2 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.69 7.75 -12.99 -0.10 15.59 16 10 O -0.58 -18.58 14.70 5.20 0.08 -18.50 16 11 N -0.75 -16.93 5.10 -53.69 -0.27 -17.20 16 12 C 0.14 2.60 3.08 -66.36 -0.20 2.39 16 13 H 0.09 1.94 7.09 -51.93 -0.37 1.58 16 14 C 0.03 0.62 7.35 37.93 0.28 0.90 16 15 O -0.38 -6.62 11.65 -35.23 -0.41 -7.03 16 16 C 0.05 0.73 7.04 38.10 0.27 1.00 16 17 C -0.10 -1.46 3.04 -88.88 -0.27 -1.73 16 18 H 0.09 1.26 7.52 -51.93 -0.39 0.87 16 19 C -0.14 -1.80 4.88 -90.62 -0.44 -2.24 16 20 C -0.17 -2.11 10.19 -26.69 -0.27 -2.38 16 21 C -0.18 -1.90 10.08 -26.69 -0.27 -2.17 16 22 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 23 H 0.38 7.72 8.32 -40.82 -0.34 7.38 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.10 2.05 8.06 -51.93 -0.42 1.63 16 26 H 0.06 0.72 7.87 -51.92 -0.41 0.31 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.11 1.40 7.98 -51.93 -0.41 0.98 16 29 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -33.21 274.40 -6.71 -39.92 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.42 Total: 7.92 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.45 Total: -2.04 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.38 Total: -39.59 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.33 Total: -25.53 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.21 -6.71 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885675722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.039 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds