Wall clock time and date at job start Thu Apr 9 2020 11:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47002 * 240.00261 * 3 2 1 5 5 H 1.48496 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47014 * 120.00226 * 3 2 1 7 7 C 1.40049 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00464 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99602 * 0.02562 * 9 7 2 11 11 N 1.34768 * 120.00215 * 180.02562 * 9 7 2 12 12 C 1.46506 * 120.00142 * 179.97438 * 11 9 7 13 13 H 1.09004 * 110.45377 * 325.70272 * 12 11 9 14 14 C 1.54477 * 110.50863 * 88.30537 * 12 11 9 15 15 O 1.44429 * 104.80540 * 94.67144 * 14 12 11 16 16 C 1.44420 * 105.27285 * 40.50541 * 15 14 12 17 17 C 1.54503 * 110.51160 * 203.09386 * 12 11 9 18 18 H 1.08996 * 110.51459 * 0.02562 * 17 12 11 19 19 C 1.53011 * 110.50831 * 122.71092 * 17 12 11 20 20 C 1.52999 * 117.49923 * 248.74715 * 19 17 12 21 21 C 1.52998 * 117.49841 * 180.08767 * 19 17 12 22 22 H 0.96996 * 119.99463 * 359.97438 * 1 2 3 23 23 H 0.97002 * 120.00385 * 0.02562 * 11 9 7 24 24 H 1.09001 * 110.37033 * 213.49799 * 14 12 11 25 25 H 1.09001 * 110.37605 * 335.83246 * 14 12 11 26 26 H 1.09008 * 110.37115 * 78.32519 * 16 15 14 27 27 H 1.09000 * 110.37201 * 200.54686 * 16 15 14 28 28 H 1.09001 * 115.54657 * 34.41731 * 19 17 12 29 29 H 1.09000 * 117.49845 * 359.97438 * 20 19 17 30 30 H 1.08995 * 117.49984 * 145.02109 * 20 19 17 31 31 H 1.09001 * 117.49837 * 214.98272 * 21 19 17 32 32 H 1.09003 * 117.49579 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9165 0.0000 13 1 0.2955 -4.8244 0.5759 14 6 0.9082 -5.3641 -1.4460 15 8 1.9871 -6.2594 -1.7931 16 6 2.2211 -7.0507 -0.6078 17 6 2.0988 -6.0507 0.5675 18 1 3.0798 -5.6675 0.8481 19 6 1.4168 -6.7110 1.7677 20 6 2.0475 -6.4960 3.1450 21 6 2.1566 -7.8591 2.4571 22 1 -0.4849 0.8401 0.0004 23 1 2.9190 -3.6478 -0.0002 24 1 -0.0469 -5.8878 -1.4856 25 1 0.8985 -4.5041 -2.1156 26 1 1.4672 -7.8330 -0.5188 27 1 3.2192 -7.4879 -0.6343 28 1 0.3298 -6.7718 1.7158 29 1 2.9484 -5.8847 3.1961 30 1 1.3754 -6.4159 3.9993 31 1 1.5562 -8.6752 2.8591 32 1 3.1290 -8.1444 2.0554 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885675722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:39 Heat of formation + Delta-G solvation = -89.329354 kcal Electronic energy + Delta-G solvation = -15647.188528 eV Core-core repulsion = 12993.224094 eV Total energy + Delta-G solvation = -2653.964434 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02410 -38.90892 -37.77818 -35.08011 -34.35716 -31.46655 -29.70408 -27.99355 -24.50714 -23.47533 -23.00211 -21.41328 -21.10774 -19.18897 -17.59841 -17.45575 -16.96998 -16.48020 -15.96017 -15.88217 -15.37751 -14.88446 -14.40316 -14.16274 -13.38428 -13.36228 -12.88508 -12.81066 -12.63072 -12.52662 -12.37727 -12.34776 -12.05108 -11.89008 -11.15851 -10.99038 -10.92847 -10.73688 -9.87146 -9.42910 -8.30009 -6.86807 1.39418 1.42805 1.54485 2.23939 2.45345 2.81370 3.00848 3.05091 3.50200 3.65802 3.79742 3.92064 4.01827 4.23828 4.25904 4.37027 4.48623 4.51687 4.70267 4.81748 4.83499 4.90103 5.02867 5.08561 5.28086 5.30739 5.33240 5.74908 5.89154 6.20237 6.28657 6.85794 7.51903 8.47878 8.66166 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.036124 B = 0.006945 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.915321 B = 4030.461323 C = 4354.818100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.540 3.460 10 O -0.629 6.629 11 N -0.744 5.744 12 C 0.128 3.872 13 H 0.064 0.936 14 C 0.041 3.959 15 O -0.391 6.391 16 C 0.053 3.947 17 C -0.084 4.084 18 H 0.090 0.910 19 C -0.160 4.160 20 C -0.188 4.188 21 C -0.150 4.150 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -12.666 3.315 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.517 6.517 11 N -0.397 5.397 12 C 0.021 3.979 13 H 0.082 0.918 14 C -0.037 4.037 15 O -0.310 6.310 16 C -0.023 4.023 17 C -0.104 4.104 18 H 0.108 0.892 19 C -0.179 4.179 20 C -0.225 4.225 21 C -0.187 4.187 22 H 0.085 0.915 23 H 0.226 0.774 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.992 -12.611 3.114 14.305 hybrid contribution 0.150 0.988 0.117 1.006 sum 6.141 -11.623 3.230 13.536 Atomic orbital electron populations 1.70178 1.09477 1.29013 1.36390 1.26958 0.95531 1.04894 0.91176 0.85082 0.78234 0.74795 0.80257 1.17945 1.19810 1.17809 1.21412 0.94701 0.90230 1.54872 0.89649 1.18559 0.86862 0.84224 0.75879 1.90548 1.16020 1.87889 1.57213 1.45859 1.08942 1.04228 1.80685 1.21991 0.95974 0.84865 0.95071 0.91793 1.23778 0.90589 0.92818 0.96540 1.89082 1.53935 1.52153 1.35859 1.23685 1.03516 0.93064 0.82042 1.22347 0.98788 0.93996 0.95219 0.89161 1.22144 0.98749 1.04339 0.92631 1.23062 1.03052 1.01016 0.95326 1.23054 1.02385 0.91208 1.02005 0.91542 0.77350 0.91066 0.91780 0.90459 0.86683 0.88298 0.89076 0.88696 0.87178 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.69 11.83 21.84 0.26 -50.43 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 1.00 41.32 29.56 68.60 2.03 43.34 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.58 -33.06 9.54 24.83 0.24 -32.82 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.54 31.64 7.75 86.36 0.67 32.31 16 10 O -0.63 -42.25 14.70 -4.32 -0.06 -42.31 16 11 N -0.74 -34.12 5.10 -442.01 -2.25 -36.37 16 12 C 0.13 5.00 3.08 46.00 0.14 5.14 16 13 H 0.06 2.86 7.09 -2.39 -0.02 2.85 16 14 C 0.04 1.56 7.35 72.48 0.53 2.09 16 15 O -0.39 -13.16 11.65 -148.98 -1.74 -14.90 16 16 C 0.05 1.31 7.04 72.59 0.51 1.82 16 17 C -0.08 -2.36 3.04 -9.67 -0.03 -2.39 16 18 H 0.09 2.46 7.52 -2.39 -0.02 2.44 16 19 C -0.16 -3.90 4.88 -10.79 -0.05 -3.95 16 20 C -0.19 -4.22 10.19 30.62 0.31 -3.91 16 21 C -0.15 -2.60 10.08 30.62 0.31 -2.29 16 22 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 23 H 0.39 15.94 8.32 -92.71 -0.77 15.17 16 24 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 25 H 0.06 2.84 8.06 -2.39 -0.02 2.82 16 26 H 0.08 1.65 7.87 -2.38 -0.02 1.63 16 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 2.55 7.98 -2.39 -0.02 2.53 16 29 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.60 274.40 1.68 -72.91 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.35 Total: 29.61 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 3.10 Total: -1.86 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -1.99 Total: -86.81 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.80 Total: -57.21 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -74.60 1.68 -72.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885675722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.416 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds