Wall clock time and date at job start Thu Apr 9 2020 11:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21257 * 120.00014 * 2 1 4 4 C 1.46843 * 120.00178 * 180.02562 * 2 1 3 5 5 C 1.50694 * 119.99802 * 180.02562 * 4 2 1 6 6 N 1.29505 * 119.99722 * 359.97438 * 4 2 1 7 7 O 1.41602 * 119.99953 * 173.66002 * 6 4 2 8 8 C 1.42897 * 114.00177 * 184.81048 * 7 6 4 9 9 C 1.53005 * 109.47170 * 175.52056 * 8 7 6 10 10 C 1.50695 * 115.54821 * 186.00844 * 9 8 7 11 11 H 1.08000 * 120.00088 * 144.44490 * 10 9 8 12 12 C 1.37885 * 120.00228 * 324.43730 * 10 9 8 13 13 N 1.31510 * 119.99802 * 168.02877 * 12 10 9 14 14 Si 1.86805 * 119.99743 * 348.03197 * 12 10 9 15 15 H 1.48495 * 109.46845 * 95.23980 * 14 12 10 16 16 H 1.48502 * 109.46841 * 215.23969 * 14 12 10 17 17 H 1.48500 * 109.47126 * 335.23643 * 14 12 10 18 18 C 1.52999 * 117.49612 * 40.33792 * 9 8 7 19 19 C 1.52997 * 117.49681 * 331.67921 * 9 8 7 20 20 H 1.09002 * 109.47305 * 269.99822 * 1 2 3 21 21 H 1.09001 * 109.47553 * 30.00293 * 1 2 3 22 22 H 1.09006 * 109.46952 * 150.00199 * 1 2 3 23 23 H 1.09000 * 109.47291 * 270.68035 * 5 4 2 24 24 H 1.09004 * 109.47734 * 30.68063 * 5 4 2 25 25 H 1.09007 * 109.47349 * 150.68619 * 5 4 2 26 26 H 1.09003 * 109.46679 * 295.51669 * 8 7 6 27 27 H 1.08999 * 109.47337 * 55.51534 * 8 7 6 28 28 H 0.97009 * 119.99595 * 180.02562 * 13 12 10 29 29 H 1.08994 * 117.50100 * 359.97438 * 18 9 8 30 30 H 1.09000 * 117.49780 * 145.02577 * 18 9 8 31 31 H 1.09004 * 117.49716 * 214.98537 * 19 9 8 32 32 H 1.08998 * 117.50113 * 359.97053 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.7481 -1.2716 0.0000 6 7 1.5937 -2.3932 -0.0006 7 8 2.2951 -3.6157 -0.1365 8 6 1.4495 -4.7639 -0.2290 9 6 2.3038 -6.0074 -0.4839 10 6 1.5388 -7.2790 -0.7456 11 1 1.9206 -8.0038 -1.4494 12 6 0.3514 -7.5174 -0.0865 13 7 -0.4322 -8.4985 -0.4775 14 14 -0.1442 -6.4467 1.3618 15 1 -1.0399 -5.3602 0.8904 16 1 -0.8568 -7.2742 2.3682 17 1 1.0703 -5.8547 1.9782 18 6 3.6274 -6.1226 0.2748 19 6 3.6285 -5.8146 -1.2246 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5138 23 1 4.1119 -1.2587 -1.0274 24 1 4.1113 -0.3881 0.5251 25 1 4.1114 -2.1680 0.5027 26 1 0.8994 -4.8860 0.7041 27 1 0.7459 -4.6317 -1.0510 28 1 -1.2678 -8.6660 -0.0139 29 1 3.8898 -5.3124 0.9550 30 1 3.9452 -7.1183 0.5841 31 1 3.9469 -6.6078 -1.9012 32 1 3.8912 -4.8021 -1.5309 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902758388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:53 Heat of formation + Delta-G solvation = 13.968047 kcal Electronic energy + Delta-G solvation = -15418.489821 eV Core-core repulsion = 12769.004698 eV Total energy + Delta-G solvation = -2649.485123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69198 -38.04958 -36.35811 -33.96145 -32.31576 -30.34558 -28.42957 -27.21730 -24.94458 -23.23085 -21.42197 -19.19891 -18.98533 -17.02667 -16.62621 -15.84388 -15.68591 -15.31231 -14.84787 -14.36870 -14.26447 -13.42170 -13.31889 -12.93194 -12.66104 -12.29995 -12.18206 -11.99424 -11.71931 -11.02477 -10.68312 -10.50987 -10.48063 -10.08494 -9.88052 -9.51512 -9.49741 -9.19531 -8.68011 -8.33961 -6.29829 -4.23908 0.75484 2.53126 2.74292 3.14894 3.28570 3.29358 3.86364 4.23254 4.68738 4.86824 5.02217 5.26511 5.29907 5.34595 5.45914 5.53166 5.74590 5.77735 5.83339 5.99688 6.04044 6.12406 6.37656 6.51294 6.56470 6.73579 6.96118 7.08668 7.18167 7.47236 7.61790 8.35589 8.75418 9.32596 10.82168 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.007828 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.554600 B = 3576.038962 C = 4156.356968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.422 3.578 3 O -0.445 6.445 4 C 0.043 3.957 5 C -0.137 4.137 6 N -0.278 5.278 7 O -0.206 6.206 8 C 0.085 3.915 9 C 0.011 3.989 10 C -0.482 4.482 11 H 0.085 0.915 12 C 0.077 3.923 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.258 1.258 18 C -0.201 4.201 19 C -0.180 4.180 20 H 0.101 0.899 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 13.650 1.855 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.297 3.703 3 O -0.315 6.315 4 C -0.148 4.148 5 C -0.195 4.195 6 N -0.025 5.025 7 O -0.228 6.228 8 C 0.010 3.990 9 C 0.008 3.992 10 C -0.519 4.519 11 H 0.103 0.897 12 C -0.127 4.127 13 N -0.519 5.519 14 Si 0.710 3.290 15 H -0.204 1.204 16 H -0.220 1.220 17 H -0.184 1.184 18 C -0.239 4.239 19 C -0.218 4.218 20 H 0.119 0.881 21 H 0.108 0.892 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.150 13.726 1.928 14.026 hybrid contribution 0.256 0.364 0.795 0.911 sum 2.406 14.090 2.722 14.550 Atomic orbital electron populations 1.22211 0.92361 1.05495 1.05275 1.22142 0.91903 0.85756 0.70486 1.90558 1.72362 1.32944 1.35629 1.25181 0.96883 0.92872 0.99897 1.21094 0.90353 1.04181 1.03921 1.76490 1.27428 0.93376 1.05255 1.89955 1.31312 1.10587 1.90933 1.23011 0.93900 0.81421 1.00717 1.19376 0.86796 0.92230 1.00779 1.20299 1.05358 1.00550 1.25659 0.89662 1.25014 0.95629 0.95346 0.96714 1.69905 1.11353 1.31060 1.39575 0.87061 0.78781 0.79604 0.83574 1.20392 1.21965 1.18389 1.23122 1.06488 1.00792 0.93490 1.22742 1.04011 1.00382 0.94632 0.88054 0.89194 0.88570 0.89972 0.90189 0.89947 0.92701 0.91381 0.92144 0.91156 0.89664 0.89931 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 10.02 36.00 0.36 -1.57 16 2 C 0.42 5.32 7.23 -30.83 -0.22 5.10 16 3 O -0.45 -6.33 17.11 5.58 0.10 -6.24 16 4 C 0.04 0.61 7.10 -80.10 -0.57 0.04 16 5 C -0.14 -1.78 9.51 36.00 0.34 -1.44 16 6 N -0.28 -4.77 10.48 34.93 0.37 -4.41 16 7 O -0.21 -4.09 8.49 -11.47 -0.10 -4.18 16 8 C 0.08 1.88 5.03 37.16 0.19 2.06 16 9 C 0.01 0.25 1.85 -155.66 -0.29 -0.04 16 10 C -0.48 -13.17 9.58 -34.44 -0.33 -13.50 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 13 N -0.88 -25.83 13.96 55.43 0.77 -25.06 16 14 Si 0.88 21.16 24.20 -169.99 -4.11 17.04 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -6.08 6.37 56.52 0.36 -5.72 16 18 C -0.20 -4.30 9.67 -26.69 -0.26 -4.55 16 19 C -0.18 -3.74 9.63 -26.70 -0.26 -4.00 16 20 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.10 1.00 7.61 -51.93 -0.40 0.60 16 23 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 25 H 0.08 1.14 7.46 -51.93 -0.39 0.76 16 26 H 0.06 1.27 2.63 -51.93 -0.14 1.14 16 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.42 7.85 -51.93 -0.41 1.01 16 30 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 LS Contribution 275.82 15.07 4.16 4.16 Total: -1.00 -29.44 275.82 -4.20 -33.65 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.25 Total: 0.88 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.13 Total: -15.85 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 1.14 Total: -29.46 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.00 Total: -10.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.11 Total: 17.04 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.44 -4.20 -33.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902758388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.615 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds