Wall clock time and date at job start Thu Apr 9 2020 11:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21257 * 120.00014 * 2 1 4 4 C 1.46843 * 120.00178 * 180.02562 * 2 1 3 5 5 C 1.50694 * 119.99802 * 180.02562 * 4 2 1 6 6 N 1.29505 * 119.99722 * 359.97438 * 4 2 1 7 7 O 1.41602 * 119.99953 * 173.66002 * 6 4 2 8 8 C 1.42897 * 114.00177 * 184.81048 * 7 6 4 9 9 C 1.53005 * 109.47170 * 175.52056 * 8 7 6 10 10 C 1.50695 * 115.54821 * 186.00844 * 9 8 7 11 11 H 1.08000 * 120.00088 * 144.44490 * 10 9 8 12 12 C 1.37885 * 120.00228 * 324.43730 * 10 9 8 13 13 N 1.31510 * 119.99802 * 168.02877 * 12 10 9 14 14 Si 1.86805 * 119.99743 * 348.03197 * 12 10 9 15 15 H 1.48495 * 109.46845 * 95.23980 * 14 12 10 16 16 H 1.48502 * 109.46841 * 215.23969 * 14 12 10 17 17 H 1.48500 * 109.47126 * 335.23643 * 14 12 10 18 18 C 1.52999 * 117.49612 * 40.33792 * 9 8 7 19 19 C 1.52997 * 117.49681 * 331.67921 * 9 8 7 20 20 H 1.09002 * 109.47305 * 269.99822 * 1 2 3 21 21 H 1.09001 * 109.47553 * 30.00293 * 1 2 3 22 22 H 1.09006 * 109.46952 * 150.00199 * 1 2 3 23 23 H 1.09000 * 109.47291 * 270.68035 * 5 4 2 24 24 H 1.09004 * 109.47734 * 30.68063 * 5 4 2 25 25 H 1.09007 * 109.47349 * 150.68619 * 5 4 2 26 26 H 1.09003 * 109.46679 * 295.51669 * 8 7 6 27 27 H 1.08999 * 109.47337 * 55.51534 * 8 7 6 28 28 H 0.97009 * 119.99595 * 180.02562 * 13 12 10 29 29 H 1.08994 * 117.50100 * 359.97438 * 18 9 8 30 30 H 1.09000 * 117.49780 * 145.02577 * 18 9 8 31 31 H 1.09004 * 117.49716 * 214.98537 * 19 9 8 32 32 H 1.08998 * 117.50113 * 359.97053 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 3.7481 -1.2716 0.0000 6 7 1.5937 -2.3932 -0.0006 7 8 2.2951 -3.6157 -0.1365 8 6 1.4495 -4.7639 -0.2290 9 6 2.3038 -6.0074 -0.4839 10 6 1.5388 -7.2790 -0.7456 11 1 1.9206 -8.0038 -1.4494 12 6 0.3514 -7.5174 -0.0865 13 7 -0.4322 -8.4985 -0.4775 14 14 -0.1442 -6.4467 1.3618 15 1 -1.0399 -5.3602 0.8904 16 1 -0.8568 -7.2742 2.3682 17 1 1.0703 -5.8547 1.9782 18 6 3.6274 -6.1226 0.2748 19 6 3.6285 -5.8146 -1.2246 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5138 23 1 4.1119 -1.2587 -1.0274 24 1 4.1113 -0.3881 0.5251 25 1 4.1114 -2.1680 0.5027 26 1 0.8994 -4.8860 0.7041 27 1 0.7459 -4.6317 -1.0510 28 1 -1.2678 -8.6660 -0.0139 29 1 3.8898 -5.3124 0.9550 30 1 3.9452 -7.1183 0.5841 31 1 3.9469 -6.6078 -1.9012 32 1 3.8912 -4.8021 -1.5309 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902758388.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:53 Heat of formation + Delta-G solvation = -4.721854 kcal Electronic energy + Delta-G solvation = -15419.300276 eV Core-core repulsion = 12769.004698 eV Total energy + Delta-G solvation = -2650.295578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76438 -39.62163 -37.83707 -35.33919 -34.38247 -31.21835 -29.74854 -28.87639 -26.74503 -24.37844 -23.12561 -21.07968 -20.19358 -18.68536 -18.04734 -17.33666 -17.01185 -16.57208 -16.09818 -15.89451 -15.75595 -14.97795 -14.91150 -14.43295 -13.85223 -13.55592 -13.31161 -13.12163 -13.02487 -12.82891 -12.53361 -12.18526 -11.89351 -11.67432 -11.52126 -11.29115 -10.98183 -10.76330 -10.56819 -10.14224 -8.41566 -6.39519 -0.36165 1.21788 1.25670 1.33745 1.42680 1.60048 2.23561 2.75870 2.83055 3.39070 3.83456 3.98460 4.03160 4.10689 4.26155 4.31077 4.47053 4.51936 4.54009 4.58994 4.75319 4.88991 4.91981 4.96692 5.10319 5.17598 5.24869 5.50234 5.60067 5.89955 6.22738 6.29878 6.60208 7.19967 8.74619 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.007828 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.554600 B = 3576.038962 C = 4156.356968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.429 3.571 3 O -0.458 6.458 4 C 0.060 3.940 5 C -0.141 4.141 6 N -0.299 5.299 7 O -0.220 6.220 8 C 0.099 3.901 9 C -0.022 4.022 10 C -0.490 4.490 11 H 0.046 0.954 12 C 0.028 3.972 13 N -0.931 5.931 14 Si 0.939 3.061 15 H -0.264 1.264 16 H -0.292 1.292 17 H -0.248 1.248 18 C -0.187 4.187 19 C -0.162 4.162 20 H 0.119 0.881 21 H 0.109 0.891 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.272 0.728 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 16.330 2.782 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.304 3.696 3 O -0.328 6.328 4 C -0.132 4.132 5 C -0.199 4.199 6 N -0.050 5.050 7 O -0.238 6.238 8 C 0.024 3.976 9 C -0.024 4.024 10 C -0.528 4.528 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.569 5.569 14 Si 0.767 3.233 15 H -0.189 1.189 16 H -0.220 1.220 17 H -0.174 1.174 18 C -0.225 4.225 19 C -0.199 4.199 20 H 0.137 0.863 21 H 0.128 0.872 22 H 0.109 0.891 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.596 16.390 2.846 16.836 hybrid contribution 0.240 -0.333 0.428 0.593 sum 2.836 16.056 3.273 16.630 Atomic orbital electron populations 1.22260 0.89842 1.06240 1.06588 1.22431 0.92990 0.84514 0.69658 1.90571 1.72899 1.33040 1.36331 1.25791 0.98077 0.92939 0.96366 1.21186 0.89331 1.04591 1.04775 1.76599 1.27028 0.92737 1.08618 1.89865 1.30996 1.11186 1.91768 1.22513 0.93307 0.82018 0.99780 1.19282 0.87687 0.91651 1.03785 1.20423 1.05876 1.01762 1.24689 0.93540 1.25750 0.95635 0.96665 0.99166 1.70024 1.12216 1.33309 1.41307 0.86094 0.78893 0.78193 0.80158 1.18921 1.21959 1.17363 1.23081 1.03909 1.01282 0.94198 1.22763 1.01309 1.01422 0.94413 0.86276 0.87196 0.89067 0.88830 0.88578 0.90689 0.93541 0.92357 0.91905 0.89421 0.90005 0.90082 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 10.02 71.23 0.71 -2.42 16 2 C 0.43 9.46 7.23 27.94 0.20 9.66 16 3 O -0.46 -11.59 17.11 -2.96 -0.05 -11.64 16 4 C 0.06 1.56 7.10 45.15 0.32 1.88 16 5 C -0.14 -3.23 9.51 71.23 0.68 -2.55 16 6 N -0.30 -9.57 10.48 -43.39 -0.45 -10.02 16 7 O -0.22 -8.28 8.49 -38.79 -0.33 -8.61 16 8 C 0.10 4.29 5.03 71.98 0.36 4.65 16 9 C -0.02 -1.01 1.85 -52.93 -0.10 -1.11 16 10 C -0.49 -27.47 9.58 25.60 0.25 -27.23 16 11 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 12 C 0.03 1.56 5.43 84.66 0.46 2.02 16 13 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 14 Si 0.94 43.66 24.20 68.60 1.66 45.32 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.25 -11.06 6.37 99.48 0.63 -10.42 16 18 C -0.19 -7.68 9.67 30.62 0.30 -7.38 16 19 C -0.16 -6.50 9.63 30.62 0.29 -6.20 16 20 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.64 7.61 -2.38 -0.02 1.62 16 23 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.10 1.91 7.72 -2.39 -0.02 1.89 16 25 H 0.07 1.88 7.46 -2.38 -0.02 1.86 16 26 H 0.05 2.07 2.63 -2.39 -0.01 2.07 16 27 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 29 H 0.09 3.30 7.85 -2.39 -0.02 3.28 16 30 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 32 H 0.10 3.50 7.48 -2.39 -0.02 3.48 16 Total: -1.00 -63.48 275.82 5.64 -57.84 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.04 Total: 11.52 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 3.47 Total: -28.69 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.16 Total: -65.74 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.38 Total: -20.25 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.66 Total: 45.32 kcal Total: -63.48 5.64 -57.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902758388.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.121 kcal (2) G-P(sol) polarization free energy of solvation -63.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds