Wall clock time and date at job start Thu Apr 9 2020 11:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 125.30477 * 2 1 4 4 O 1.41877 * 107.41494 * 179.89694 * 3 2 1 5 5 N 1.41877 * 106.38549 * 0.36479 * 4 3 2 6 6 C 1.29953 * 107.41389 * 359.78497 * 5 4 3 7 7 C 1.50703 * 125.30284 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46928 * 195.00323 * 7 6 5 9 9 C 1.52994 * 109.47356 * 74.99357 * 7 6 5 10 10 N 1.46906 * 109.46804 * 314.99588 * 7 6 5 11 11 C 1.46896 * 110.99897 * 205.00042 * 10 7 6 12 12 C 1.52997 * 109.47264 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99879 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46901 * 89.99989 * 17 15 13 19 19 H 1.48497 * 109.47707 * 209.99854 * 17 15 13 20 20 H 1.48501 * 109.47128 * 330.00168 * 17 15 13 21 21 H 1.09001 * 109.46953 * 269.69057 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.68655 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.69285 * 1 2 3 24 24 H 1.08997 * 109.47671 * 300.00883 * 9 7 6 25 25 H 1.09004 * 109.46761 * 60.00441 * 9 7 6 26 26 H 1.09003 * 109.47412 * 179.97438 * 9 7 6 27 27 H 1.00901 * 110.99970 * 81.04885 * 10 7 6 28 28 H 1.09006 * 109.47443 * 300.00412 * 11 10 7 29 29 H 1.08997 * 109.47448 * 60.00076 * 11 10 7 30 30 H 1.08998 * 109.47019 * 299.99705 * 12 11 10 31 31 H 1.09000 * 109.47404 * 59.99953 * 12 11 10 32 32 H 0.96996 * 119.99808 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0024 5 7 3.5710 -0.7936 -0.0048 6 6 2.3213 -1.1498 -0.0062 7 6 1.8209 -2.5714 -0.0128 8 1 0.7639 -2.5832 -0.2787 9 6 2.0041 -3.1830 1.3775 10 7 2.5819 -3.3538 -0.9961 11 6 1.8026 -4.5056 -1.4692 12 6 2.6263 -5.2946 -2.4888 13 6 1.8265 -6.4759 -2.9746 14 1 0.8306 -6.6470 -2.5938 15 6 2.3665 -7.3382 -3.9052 16 7 3.5793 -7.1295 -4.3693 17 14 1.3755 -8.8029 -4.5068 18 1 0.5830 -8.4081 -5.6991 19 1 2.2974 -9.9091 -4.8694 20 1 0.4581 -9.2557 -3.4304 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3634 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5186 24 1 3.0611 -3.1710 1.6434 25 1 1.4394 -2.6024 2.1071 26 1 1.6418 -4.2110 1.3729 27 1 3.4685 -3.6489 -0.6153 28 1 1.5568 -5.1496 -0.6247 29 1 0.8833 -4.1545 -1.9379 30 1 2.8723 -4.6509 -3.3333 31 1 3.5454 -5.6458 -2.0198 32 1 3.9592 -7.7363 -5.0236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926131798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:05 Heat of formation + Delta-G solvation = 75.183343 kcal Electronic energy + Delta-G solvation = -15039.209879 eV Core-core repulsion = 12424.672001 eV Total energy + Delta-G solvation = -2614.537877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.45351 -37.22005 -34.31524 -33.54001 -32.36194 -30.56037 -28.88964 -28.00354 -24.90872 -23.83347 -21.51864 -20.74295 -20.20452 -17.01417 -16.41968 -16.06167 -15.18153 -14.81930 -14.55586 -14.40502 -14.05775 -13.58917 -13.33995 -12.87204 -12.74926 -12.41656 -12.20850 -11.78603 -11.57268 -11.37461 -11.16929 -10.97509 -10.71198 -10.66407 -10.57043 -10.12998 -9.49125 -9.21057 -8.40706 -8.07635 -6.03855 -4.07453 0.58509 1.99624 2.70637 3.18126 3.29305 3.35787 3.37961 3.76192 4.37581 4.51487 4.69183 4.80665 4.99696 5.04479 5.14383 5.17862 5.32217 5.46627 5.61285 5.66765 5.69225 5.97422 6.16437 6.25131 6.84016 6.97915 7.25610 7.60949 7.67839 7.81710 8.00576 8.35753 8.99735 9.56812 11.07486 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.046524 B = 0.004982 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.694377 B = 5619.409713 C = 5770.132905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.081 3.919 3 N -0.287 5.287 4 O 0.015 5.985 5 N -0.255 5.255 6 C 0.092 3.908 7 C 0.145 3.855 8 H 0.108 0.892 9 C -0.179 4.179 10 N -0.683 5.683 11 C 0.067 3.933 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.347 0.653 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 10.477 10.968 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 N -0.033 5.033 4 O -0.125 6.125 5 N 0.001 4.999 6 C -0.092 4.092 7 C 0.033 3.967 8 H 0.125 0.875 9 C -0.239 4.239 10 N -0.314 5.314 11 C -0.061 4.061 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.113 0.887 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.145 11.649 10.295 16.717 hybrid contribution -0.910 -1.790 0.298 2.030 sum -7.055 9.859 10.593 16.099 Atomic orbital electron populations 1.20587 0.84445 1.05440 1.04611 1.24558 1.00220 0.89038 0.96347 1.79844 0.89507 1.19869 1.14085 1.93375 1.19868 1.14513 1.84721 1.79967 1.17681 0.90153 1.12142 1.24679 0.89684 0.98892 0.95970 1.20220 0.98936 0.84862 0.92712 0.87462 1.22507 1.03066 1.02137 0.96157 1.60589 1.06930 1.26425 1.37492 1.22254 0.97257 0.88655 0.97896 1.19076 0.94862 0.93899 0.93485 1.21129 1.01307 1.09804 1.24019 0.92666 1.25008 0.94965 0.98003 0.96339 1.69976 1.14909 1.37760 1.30419 0.86578 0.79882 0.82296 0.79130 1.20613 1.21208 1.19898 0.88693 0.89259 0.88541 0.91710 0.91920 0.90507 0.83375 0.95909 0.91972 0.95589 0.96639 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.18 36.01 0.37 -0.29 16 2 C 0.08 0.97 7.19 -82.38 -0.59 0.38 16 3 N -0.29 -4.14 12.98 33.74 0.44 -3.70 16 4 O 0.01 0.24 13.71 12.02 0.16 0.41 16 5 N -0.26 -4.14 12.96 33.74 0.44 -3.71 16 6 C 0.09 1.26 6.04 -82.38 -0.50 0.76 16 7 C 0.15 1.84 2.98 -68.86 -0.21 1.63 16 8 H 0.11 1.14 6.46 -51.93 -0.34 0.80 16 9 C -0.18 -1.92 9.14 37.15 0.34 -1.58 16 10 N -0.68 -11.42 6.21 -107.95 -0.67 -12.09 16 11 C 0.07 1.28 5.42 -3.83 -0.02 1.26 16 12 C 0.02 0.61 5.23 -27.88 -0.15 0.46 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.10 0.57 7.00 -51.93 -0.36 0.21 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 27 H 0.35 5.90 8.47 -39.29 -0.33 5.57 16 28 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 29 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 280.52 15.07 4.23 4.23 Total: -1.00 -31.60 280.52 -5.15 -36.76 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.30 Total: -1.68 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.17 Total: -10.51 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.94 Total: -45.37 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: 0.16 Total: 0.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.60 -5.15 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.942 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds