Wall clock time and date at job start Thu Apr 9 2020 11:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29949 * 125.30477 * 2 1 4 4 O 1.41877 * 107.41494 * 179.89694 * 3 2 1 5 5 N 1.41877 * 106.38549 * 0.36479 * 4 3 2 6 6 C 1.29953 * 107.41389 * 359.78497 * 5 4 3 7 7 C 1.50703 * 125.30284 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46928 * 195.00323 * 7 6 5 9 9 C 1.52994 * 109.47356 * 74.99357 * 7 6 5 10 10 N 1.46906 * 109.46804 * 314.99588 * 7 6 5 11 11 C 1.46896 * 110.99897 * 205.00042 * 10 7 6 12 12 C 1.52997 * 109.47264 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00069 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99879 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46901 * 89.99989 * 17 15 13 19 19 H 1.48497 * 109.47707 * 209.99854 * 17 15 13 20 20 H 1.48501 * 109.47128 * 330.00168 * 17 15 13 21 21 H 1.09001 * 109.46953 * 269.69057 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.68655 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.69285 * 1 2 3 24 24 H 1.08997 * 109.47671 * 300.00883 * 9 7 6 25 25 H 1.09004 * 109.46761 * 60.00441 * 9 7 6 26 26 H 1.09003 * 109.47412 * 179.97438 * 9 7 6 27 27 H 1.00901 * 110.99970 * 81.04885 * 10 7 6 28 28 H 1.09006 * 109.47443 * 300.00412 * 11 10 7 29 29 H 1.08997 * 109.47448 * 60.00076 * 11 10 7 30 30 H 1.08998 * 109.47019 * 299.99705 * 12 11 10 31 31 H 1.09000 * 109.47404 * 59.99953 * 12 11 10 32 32 H 0.96996 * 119.99808 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0024 5 7 3.5710 -0.7936 -0.0048 6 6 2.3213 -1.1498 -0.0062 7 6 1.8209 -2.5714 -0.0128 8 1 0.7639 -2.5832 -0.2787 9 6 2.0041 -3.1830 1.3775 10 7 2.5819 -3.3538 -0.9961 11 6 1.8026 -4.5056 -1.4692 12 6 2.6263 -5.2946 -2.4888 13 6 1.8265 -6.4759 -2.9746 14 1 0.8306 -6.6470 -2.5938 15 6 2.3665 -7.3382 -3.9052 16 7 3.5793 -7.1295 -4.3693 17 14 1.3755 -8.8029 -4.5068 18 1 0.5830 -8.4081 -5.6991 19 1 2.2974 -9.9091 -4.8694 20 1 0.4581 -9.2557 -3.4304 21 1 -0.3633 -0.0056 1.0277 22 1 -0.3634 0.8928 -0.5089 23 1 -0.3633 -0.8872 -0.5186 24 1 3.0611 -3.1710 1.6434 25 1 1.4394 -2.6024 2.1071 26 1 1.6418 -4.2110 1.3729 27 1 3.4685 -3.6489 -0.6153 28 1 1.5568 -5.1496 -0.6247 29 1 0.8833 -4.1545 -1.9379 30 1 2.8723 -4.6509 -3.3333 31 1 3.5454 -5.6458 -2.0198 32 1 3.9592 -7.7363 -5.0236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926131798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:05 Heat of formation + Delta-G solvation = 51.905776 kcal Electronic energy + Delta-G solvation = -15040.219270 eV Core-core repulsion = 12424.672001 eV Total energy + Delta-G solvation = -2615.547268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.50531 -38.45860 -35.66653 -34.99514 -33.84841 -31.98862 -29.71771 -29.45867 -26.30976 -25.33050 -22.77469 -22.20584 -21.29778 -18.48703 -18.07611 -17.13158 -16.63458 -16.22991 -16.00147 -15.65645 -15.09421 -14.48537 -14.28308 -14.20649 -14.01753 -13.73574 -13.27130 -13.04304 -12.84803 -12.81165 -12.66022 -12.37365 -12.27270 -12.00505 -11.79035 -11.61843 -11.38255 -11.22348 -10.54757 -9.40163 -8.17929 -6.29591 -0.47166 1.00784 1.43767 1.44978 1.55793 1.60026 2.15716 2.42514 2.74700 3.16583 3.36817 3.69156 3.93031 4.06016 4.28289 4.32796 4.54978 4.59225 4.67542 4.74400 4.78829 4.84676 5.08732 5.14286 5.19390 5.47528 5.67724 5.78110 5.92449 6.10369 6.21574 6.38512 6.89348 7.40517 8.94468 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.046524 B = 0.004982 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.694377 B = 5619.409713 C = 5770.132905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 N -0.308 5.308 4 O -0.025 6.025 5 N -0.290 5.290 6 C 0.098 3.902 7 C 0.146 3.854 8 H 0.139 0.861 9 C -0.173 4.173 10 N -0.699 5.699 11 C 0.088 3.912 12 C 0.027 3.973 13 C -0.539 4.539 14 H 0.069 0.931 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.258 1.258 21 H 0.126 0.874 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.342 0.658 28 H 0.038 0.962 29 H 0.074 0.926 30 H -0.012 1.012 31 H -0.013 1.013 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 9.952 11.950 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 N -0.058 5.058 4 O -0.157 6.157 5 N -0.036 5.036 6 C -0.087 4.087 7 C 0.035 3.965 8 H 0.157 0.843 9 C -0.233 4.233 10 N -0.330 5.330 11 C -0.040 4.040 12 C -0.011 4.011 13 C -0.577 4.577 14 H 0.088 0.912 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.181 1.181 21 H 0.144 0.856 22 H 0.117 0.883 23 H 0.133 0.867 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.160 0.840 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.218 11.156 11.298 18.359 hybrid contribution 0.016 -1.603 0.009 1.604 sum -9.202 9.552 11.307 17.429 Atomic orbital electron populations 1.20938 0.80459 1.06848 1.06953 1.25303 1.02230 0.87482 0.93458 1.79837 0.88745 1.20872 1.16319 1.93349 1.21719 1.14631 1.86022 1.79929 1.19495 0.90379 1.13775 1.25057 0.89376 0.99857 0.94429 1.20457 0.99727 0.83412 0.92920 0.84325 1.22454 1.02771 1.02662 0.95384 1.60428 1.07077 1.25751 1.39773 1.21853 0.96328 0.89047 0.96779 1.18956 0.94675 0.93734 0.93710 1.21631 1.01983 1.10269 1.23828 0.91237 1.26015 0.95993 1.01363 0.96655 1.70134 1.16990 1.39205 1.31335 0.85412 0.78320 0.78140 0.78943 1.19902 1.21292 1.18139 0.85591 0.88258 0.86663 0.93097 0.89042 0.90054 0.83987 0.94352 0.90779 0.99349 0.99428 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.18 71.24 0.72 -0.21 16 2 C 0.10 2.14 7.19 43.49 0.31 2.45 16 3 N -0.31 -8.70 12.98 -47.16 -0.61 -9.31 16 4 O -0.02 -0.85 13.71 70.16 0.96 0.12 16 5 N -0.29 -9.52 12.96 -47.16 -0.61 -10.13 16 6 C 0.10 2.53 6.04 43.49 0.26 2.79 16 7 C 0.15 3.32 2.98 44.17 0.13 3.45 16 8 H 0.14 2.30 6.46 -2.39 -0.02 2.28 16 9 C -0.17 -3.22 9.14 71.98 0.66 -2.57 16 10 N -0.70 -22.75 6.21 -495.46 -3.08 -25.83 16 11 C 0.09 3.23 5.42 86.30 0.47 3.69 16 12 C 0.03 1.37 5.23 29.85 0.16 1.53 16 13 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 16 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 17 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.11 0.77 7.00 -2.39 -0.02 0.75 16 24 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 25 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.08 1.48 7.45 -2.39 -0.02 1.46 16 27 H 0.34 11.73 8.47 -89.69 -0.76 10.97 16 28 H 0.04 1.29 7.44 -2.38 -0.02 1.28 16 29 H 0.07 2.55 8.05 -2.39 -0.02 2.53 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -71.09 280.52 2.75 -68.34 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.36 Total: 6.21 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.41 Total: -17.67 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.02 Total: -102.05 kcal Atomic # 8 Polarization: -0.85 SS G_CDS: 0.96 Total: 0.12 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.09 2.75 -68.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.249 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds