Wall clock time and date at job start Thu Apr 9 2020 11:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47080 * 75.36346 * 3 2 1 5 5 C 1.36929 * 119.99956 * 95.93979 * 4 3 2 6 6 H 1.08003 * 119.99581 * 162.89070 * 5 4 3 7 7 C 1.38811 * 120.00189 * 342.62102 * 5 4 3 8 8 N 1.31610 * 120.00019 * 338.46135 * 7 5 4 9 9 Si 1.86800 * 119.99890 * 158.46404 * 7 5 4 10 10 H 1.48500 * 109.47348 * 59.99993 * 9 7 5 11 11 H 1.48502 * 109.47050 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47368 * 299.99944 * 9 7 5 13 13 C 1.46499 * 119.99814 * 275.94271 * 4 3 2 14 14 C 1.52996 * 109.47029 * 269.99820 * 13 4 3 15 15 H 1.08996 * 109.52930 * 305.00405 * 14 13 4 16 16 C 1.53144 * 109.52625 * 184.87068 * 14 13 4 17 17 O 1.43073 * 109.15698 * 184.78926 * 16 14 13 18 18 C 1.43078 * 113.59227 * 57.94529 * 17 16 14 19 19 C 1.53134 * 109.15500 * 302.05327 * 18 17 16 20 20 O 1.43079 * 109.52462 * 65.13562 * 14 13 4 21 21 H 4.40643 * 5.51451 * 180.02562 * 4 1 2 22 22 H 1.08998 * 109.47406 * 315.36383 * 3 2 1 23 23 H 1.09000 * 109.47376 * 195.35979 * 3 2 1 24 24 H 0.97003 * 120.00456 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.47348 * 30.00114 * 13 4 3 26 26 H 1.09000 * 109.46836 * 149.99907 * 13 4 3 27 27 H 1.09014 * 109.52456 * 304.69091 * 16 14 13 28 28 H 1.09002 * 109.52642 * 64.88050 * 16 14 13 29 29 H 1.09000 * 109.51906 * 61.96054 * 18 17 16 30 30 H 1.09003 * 109.52582 * 182.14971 * 18 17 16 31 31 H 1.08997 * 109.52889 * 175.21120 * 19 18 17 32 32 H 1.09003 * 109.52680 * 295.34750 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3482 -1.3365 5 6 3.4779 0.6404 -2.2195 6 1 4.0861 0.4075 -3.0810 7 6 3.0397 1.9409 -2.0103 8 7 1.9872 2.1669 -1.2532 9 14 3.9439 3.3700 -2.8036 10 1 3.9159 3.2152 -4.2803 11 1 3.2815 4.6448 -2.4275 12 1 5.3527 3.3863 -2.3343 13 6 3.2554 -1.7546 -1.7281 14 6 4.6502 -2.2673 -1.3640 15 1 5.4045 -1.6241 -1.8171 16 6 4.8205 -3.6986 -1.8812 17 8 6.0822 -4.2099 -1.4409 18 6 6.2380 -4.2029 -0.0186 19 6 6.0677 -2.7717 0.4985 20 8 4.8065 -2.2590 0.0582 21 1 -1.0500 0.0002 -0.0001 22 1 3.0096 -0.7304 0.7220 23 1 3.0089 0.9918 0.2722 24 1 1.6808 3.0756 -1.1073 25 1 2.5032 -2.3439 -1.2035 26 1 3.1037 -1.8466 -2.8036 27 1 4.0177 -4.3248 -1.4916 28 1 4.7876 -3.6987 -2.9707 29 1 5.4830 -4.8460 0.4336 30 1 7.2317 -4.5682 0.2408 31 1 6.1005 -2.7716 1.5880 32 1 6.8710 -2.1458 0.1098 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930314744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:08 Heat of formation + Delta-G solvation = -24.710362 kcal Electronic energy + Delta-G solvation = -15944.915980 eV Core-core repulsion = 13293.753636 eV Total energy + Delta-G solvation = -2651.162344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77861 -37.97385 -36.72145 -33.95872 -33.44243 -31.90488 -29.48467 -27.91544 -27.05342 -24.73642 -22.89193 -21.84115 -19.35719 -18.28215 -17.70787 -17.31185 -17.06102 -16.68099 -16.10057 -15.93304 -15.42453 -15.11905 -14.67013 -14.23545 -13.50607 -13.30744 -13.08087 -12.85777 -12.74308 -12.56327 -12.31255 -12.19674 -11.92891 -11.53967 -11.28075 -10.78824 -10.72329 -10.29885 -10.01515 -8.90052 -7.82165 -5.24150 1.47126 1.50427 1.56385 2.31974 2.53479 2.59715 2.84105 2.87863 3.28828 3.61584 3.94691 4.11479 4.12346 4.22395 4.24131 4.29640 4.54869 4.58058 4.65387 4.78295 4.87813 4.98465 5.09770 5.16552 5.35940 5.63597 5.69425 6.05929 6.28869 6.30415 7.10837 7.36009 7.83615 8.28403 9.19278 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.028161 B = 0.008860 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.038770 B = 3159.466963 C = 3705.453553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.134 4.134 3 C 0.278 3.722 4 N -0.594 5.594 5 C -0.272 4.272 6 H 0.076 0.924 7 C -0.047 4.047 8 N -0.914 5.914 9 Si 0.961 3.039 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.282 1.282 13 C 0.157 3.843 14 C 0.046 3.954 15 H 0.045 0.955 16 C 0.038 3.962 17 O -0.399 6.399 18 C 0.025 3.975 19 C 0.016 3.984 20 O -0.388 6.388 21 H 0.224 0.776 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.247 0.753 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 -11.271 2.517 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.136 4.136 3 C 0.153 3.847 4 N -0.314 5.314 5 C -0.402 4.402 6 H 0.093 0.907 7 C -0.243 4.243 8 N -0.558 5.558 9 Si 0.790 3.210 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.208 1.208 13 C 0.030 3.970 14 C -0.014 4.014 15 H 0.063 0.937 16 C -0.039 4.039 17 O -0.318 6.318 18 C -0.051 4.051 19 C -0.060 4.060 20 O -0.308 6.308 21 H 0.240 0.760 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.148 -11.113 2.529 12.950 hybrid contribution 0.002 1.236 -0.396 1.298 sum 6.151 -9.878 2.133 11.830 Atomic orbital electron populations 1.25020 0.96349 1.06288 1.03787 1.24791 0.96248 0.95498 0.97103 1.17585 0.82525 0.98572 0.86021 1.44052 1.74854 1.01159 1.11329 1.19449 1.25704 0.88554 1.06479 0.90652 1.25572 0.97220 1.00309 1.01192 1.70290 1.22725 1.19310 1.43502 0.85445 0.78351 0.78987 0.78251 1.20346 1.22405 1.20809 1.20845 0.92706 0.84605 0.98819 1.23481 1.00318 0.95869 0.81750 0.93712 1.23231 0.86113 0.93094 1.01460 1.88018 1.36661 1.84229 1.22879 1.23391 1.04373 0.96374 0.80961 1.23385 0.86348 0.94609 1.01686 1.88123 1.36120 1.84643 1.21873 0.75952 0.92194 0.92021 0.94394 0.93219 0.91002 0.91386 0.86657 0.91541 0.85604 0.86237 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.63 19.25 74.32 1.43 -12.20 16 2 C -0.13 -6.76 11.59 31.12 0.36 -6.40 16 3 C 0.28 14.00 5.27 84.57 0.45 14.44 16 4 N -0.59 -29.60 2.46 -712.56 -1.75 -31.36 16 5 C -0.27 -14.73 9.65 84.03 0.81 -13.92 16 6 H 0.08 3.94 7.92 -2.91 -0.02 3.91 16 7 C -0.05 -2.58 4.86 84.86 0.41 -2.17 16 8 N -0.91 -53.37 9.48 21.65 0.21 -53.17 16 9 Si 0.96 44.98 29.61 68.60 2.03 47.01 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.16 6.30 5.37 86.38 0.46 6.76 16 14 C 0.05 1.62 3.08 30.64 0.09 1.72 16 15 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 16 C 0.04 1.06 6.34 72.03 0.46 1.52 16 17 O -0.40 -11.11 10.85 -136.05 -1.48 -12.59 16 18 C 0.03 0.56 7.05 72.03 0.51 1.07 16 19 C 0.02 0.43 7.05 72.03 0.51 0.94 16 20 O -0.39 -13.74 9.25 -136.05 -1.26 -15.00 16 21 H 0.22 8.25 7.80 -4.42 -0.03 8.21 16 22 H 0.06 2.78 7.03 -2.39 -0.02 2.77 16 23 H 0.06 3.45 6.42 -2.39 -0.02 3.43 16 24 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.05 1.95 8.07 -2.38 -0.02 1.93 16 26 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 27 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -65.33 273.08 4.33 -61.00 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.09 Total: 12.34 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 5.49 Total: -8.24 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.55 Total: -84.52 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -2.73 Total: -27.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.33 4.33 -61.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.286 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds