Wall clock time and date at job start Thu Apr 9 2020 11:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47044 * 270.00076 * 3 2 1 5 5 H 1.48502 * 109.47155 * 30.00434 * 3 2 1 6 6 H 1.48503 * 109.47036 * 150.00488 * 3 2 1 7 7 C 1.40049 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99516 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00464 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99945 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00067 * 180.02562 * 9 7 2 12 12 C 1.47022 * 125.64842 * 0.02562 * 11 9 7 13 13 C 1.54323 * 107.27248 * 178.92020 * 12 11 9 14 14 C 1.55156 * 102.94338 * 337.81100 * 13 12 11 15 15 O 1.42901 * 111.00376 * 277.38945 * 14 13 12 16 16 C 1.52996 * 111.00734 * 153.57212 * 14 13 12 17 17 C 1.53002 * 117.49888 * 111.25365 * 16 14 13 18 18 C 1.53000 * 117.50107 * 179.91127 * 16 14 13 19 19 C 1.47425 * 125.65046 * 180.02562 * 11 9 7 20 20 H 0.97004 * 120.00439 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.88416 * 59.50709 * 12 11 9 22 22 H 1.09000 * 109.88216 * 298.34020 * 12 11 9 23 23 H 1.08996 * 110.72168 * 219.44566 * 13 12 11 24 24 H 1.09007 * 110.86868 * 96.24184 * 13 12 11 25 25 H 0.96707 * 113.99862 * 56.11525 * 15 14 13 26 26 H 1.09002 * 115.54951 * 325.58339 * 16 14 13 27 27 H 1.09000 * 117.49996 * 215.00804 * 17 16 14 28 28 H 1.08999 * 117.49664 * 0.02562 * 17 16 14 29 29 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 30 30 H 1.08999 * 117.49942 * 144.97366 * 18 16 14 31 31 H 1.08996 * 110.36503 * 85.30474 * 19 11 9 32 32 H 1.09005 * 110.35937 * 322.98865 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4806 -0.0005 10 8 0.0582 -2.4806 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 3.4120 -3.7925 0.0000 13 6 3.7229 -5.3038 0.0275 14 6 2.4224 -5.9156 0.6120 15 8 2.4157 -5.8373 2.0388 16 6 2.2374 -7.3604 0.1440 17 6 2.3785 -8.4660 1.1922 18 6 0.9975 -8.1094 0.6366 19 6 1.3410 -4.9909 -0.0011 20 1 -0.4851 0.8400 0.0004 21 1 3.8317 -3.3115 0.8835 22 1 3.8291 -3.3445 -0.9019 23 1 4.5727 -5.5109 0.6780 24 1 3.9082 -5.6805 -0.9784 25 1 2.5297 -4.9413 2.3841 26 1 2.5878 -7.5762 -0.8654 27 1 2.8218 -9.4091 0.8724 28 1 2.6026 -8.1640 2.2152 29 1 0.3137 -7.5728 1.2944 30 1 0.5319 -8.8175 -0.0489 31 1 1.1088 -5.3017 -1.0196 32 1 0.4410 -5.0000 0.6138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116847095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:19 Heat of formation + Delta-G solvation = -60.240031 kcal Electronic energy + Delta-G solvation = -15849.260621 eV Core-core repulsion = 13196.557594 eV Total energy + Delta-G solvation = -2652.703026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54455 -37.03353 -35.49292 -34.12082 -32.52155 -29.85344 -28.39024 -26.17382 -23.32915 -22.14482 -21.52120 -19.81814 -19.16845 -17.20572 -15.97696 -15.71234 -15.44610 -14.97157 -14.30089 -13.84804 -13.58209 -13.43651 -12.57708 -12.16395 -11.90970 -11.81057 -11.36056 -11.30538 -11.13744 -11.06833 -10.91164 -10.66130 -10.43722 -10.41758 -10.21923 -9.93435 -9.34059 -8.89111 -7.68965 -7.24640 -6.23833 -4.69167 3.11513 3.18311 3.21697 3.85782 4.04342 4.36001 4.49007 4.54388 4.83893 4.90541 5.00320 5.16427 5.37765 5.46009 5.72300 5.74115 5.77062 5.81623 5.96913 6.08625 6.26201 6.32993 6.35313 6.45446 6.50451 6.60163 7.31674 7.39759 7.90989 8.05205 8.35920 8.97687 9.43408 10.53115 10.71866 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.055350 B = 0.006860 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.747201 B = 4080.811207 C = 4354.108769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.570 3.430 10 O -0.575 6.575 11 N -0.648 5.648 12 C 0.116 3.884 13 C -0.157 4.157 14 C 0.149 3.851 15 O -0.553 6.553 16 C -0.137 4.137 17 C -0.167 4.167 18 C -0.173 4.173 19 C 0.094 3.906 20 H 0.269 0.731 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.383 0.617 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -10.777 0.697 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.377 3.623 10 O -0.457 6.457 11 N -0.389 5.389 12 C -0.009 4.009 13 C -0.195 4.195 14 C 0.108 3.892 15 O -0.360 6.360 16 C -0.155 4.155 17 C -0.204 4.204 18 C -0.210 4.210 19 C -0.030 4.030 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.232 0.768 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.538 -11.201 0.641 12.985 hybrid contribution 0.655 1.444 -0.118 1.590 sum 7.192 -9.758 0.523 12.133 Atomic orbital electron populations 1.70019 1.07100 1.27420 1.35054 1.25742 0.94642 1.00369 0.92600 0.86347 0.80135 0.81268 0.78885 1.19691 1.20382 1.18862 1.20889 0.93581 0.88943 1.54121 0.91256 1.18063 0.86685 0.81193 0.76390 1.90617 1.13890 1.85827 1.55339 1.48789 1.04581 1.04731 1.80800 1.21633 0.84321 0.93891 1.01048 1.23323 0.98125 0.96155 1.01887 1.21628 0.94184 0.92471 0.80943 1.86330 1.95855 1.34425 1.19377 1.22049 1.04116 0.90573 0.98779 1.22849 0.99931 0.97899 0.99672 1.22916 0.91259 1.03048 1.03775 1.22413 0.96476 0.84370 0.99771 0.91997 0.92696 0.92593 0.90223 0.90399 0.76808 0.86835 0.89446 0.87831 0.88444 0.89081 0.92876 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -15.20 9.06 -35.63 -0.32 -15.52 16 8 H 0.07 1.79 7.16 -52.48 -0.38 1.42 16 9 C 0.57 16.45 7.78 -12.99 -0.10 16.35 16 10 O -0.57 -18.97 15.27 5.20 0.08 -18.89 16 11 N -0.65 -14.83 3.33 -172.17 -0.57 -15.40 16 12 C 0.12 2.09 5.79 -3.06 -0.02 2.07 16 13 C -0.16 -2.24 6.14 -24.90 -0.15 -2.39 16 14 C 0.15 2.32 1.14 -88.46 -0.10 2.22 16 15 O -0.55 -8.82 11.71 -35.23 -0.41 -9.23 16 16 C -0.14 -1.81 5.15 -90.62 -0.47 -2.27 16 17 C -0.17 -2.00 9.91 -26.69 -0.26 -2.27 16 18 C -0.17 -2.19 10.06 -26.70 -0.27 -2.46 16 19 C 0.09 1.87 5.98 -2.52 -0.02 1.85 16 20 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.08 1.01 7.94 -51.92 -0.41 0.59 16 25 H 0.38 5.90 8.79 45.56 0.40 6.30 16 26 H 0.11 1.33 8.00 -51.93 -0.42 0.91 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.36 7.19 -51.93 -0.37 0.99 16 29 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 32 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -33.86 271.82 -6.66 -40.53 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.68 Total: 6.39 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.81 Total: -0.11 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.08 Total: -37.80 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.33 Total: -28.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.86 -6.66 -40.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116847095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.712 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds