Wall clock time and date at job start Thu Apr 9 2020 11:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47544 * 125.66384 * 359.69271 * 12 10 9 14 14 C 1.55415 * 104.89608 * 155.98956 * 13 12 10 15 15 C 1.53803 * 101.29312 * 35.91625 * 14 13 12 16 16 C 1.52606 * 115.99190 * 95.65524 * 15 14 13 17 17 O 1.44468 * 85.02679 * 95.89349 * 16 15 14 18 18 C 1.44474 * 93.60413 * 23.15966 * 17 16 15 19 19 C 1.47378 * 125.65682 * 179.97438 * 12 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.09004 * 110.33150 * 274.98681 * 13 12 10 24 24 H 1.09002 * 110.33008 * 37.21094 * 13 12 10 25 25 H 1.08998 * 111.25769 * 277.84762 * 14 13 12 26 26 H 1.09000 * 110.95464 * 153.85075 * 14 13 12 27 27 H 1.08998 * 113.94291 * 209.91297 * 16 15 14 28 28 H 1.08993 * 113.94565 * 341.87426 * 16 15 14 29 29 H 1.09004 * 113.94087 * 222.82211 * 18 17 16 30 30 H 1.09003 * 113.94255 * 90.86094 * 18 17 16 31 31 H 1.09001 * 109.98799 * 301.41529 * 19 12 10 32 32 H 1.08999 * 109.98969 * 62.72442 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.3640 -5.3267 -0.0012 14 6 0.3572 -6.7533 -0.6176 15 6 1.6761 -7.3244 -0.0698 16 6 1.5657 -8.1605 1.2021 17 8 1.5389 -9.2927 0.3052 18 6 2.2010 -8.5788 -0.7622 19 6 2.6234 -6.1245 -0.0190 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 -0.0151 -5.3507 1.0205 24 1 -0.2323 -4.6482 -0.6113 25 1 0.3705 -6.7133 -1.7067 26 1 -0.4968 -7.3285 -0.2598 27 1 2.4511 -8.1196 1.8365 28 1 0.6367 -8.0094 1.7516 29 1 1.7679 -8.7545 -1.7470 30 1 3.2871 -8.6701 -0.7483 31 1 3.2705 -6.1231 -0.8962 32 1 3.2258 -6.1637 0.8886 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:33 Heat of formation + Delta-G solvation = -47.317823 kcal Electronic energy + Delta-G solvation = -15553.557509 eV Core-core repulsion = 12901.414832 eV Total energy + Delta-G solvation = -2652.142677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17527 -38.64413 -36.11291 -32.95632 -31.25478 -29.48828 -28.68279 -26.84328 -25.32112 -23.29758 -22.60653 -19.20235 -18.53650 -16.64054 -16.47940 -16.17919 -15.95528 -15.20641 -15.04466 -14.76770 -14.07711 -13.60236 -12.98517 -12.81393 -12.41834 -12.08614 -12.01011 -11.76420 -11.41413 -11.18051 -10.82721 -10.74072 -10.64225 -10.55887 -9.96144 -9.80062 -9.24655 -8.69038 -8.45404 -8.13018 -6.07352 -4.06845 3.32694 3.39282 3.41642 3.48749 3.63079 3.65937 4.04828 4.26987 4.47582 4.68552 4.93697 5.12741 5.27175 5.31045 5.33651 5.37523 5.51872 5.73533 5.80393 5.82684 5.87774 5.93383 6.00814 6.05504 6.17485 6.82170 7.17788 7.30911 7.95269 8.01403 8.36987 9.04188 9.17347 9.58316 11.05103 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.067867 B = 0.005711 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.470637 B = 4901.539273 C = 5144.624091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.530 3.470 11 O -0.544 6.544 12 N -0.635 5.635 13 C 0.105 3.895 14 C -0.108 4.108 15 C -0.143 4.143 16 C 0.052 3.948 17 O -0.382 6.382 18 C 0.053 3.947 19 C 0.116 3.884 20 H 0.261 0.739 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -15.591 -0.303 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.028 4.028 10 C 0.323 3.677 11 O -0.419 6.419 12 N -0.373 5.373 13 C -0.018 4.018 14 C -0.146 4.146 15 C -0.144 4.144 16 C -0.025 4.025 17 O -0.301 6.301 18 C -0.024 4.024 19 C -0.008 4.008 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.344 -15.490 -0.283 15.497 hybrid contribution 0.366 1.037 0.010 1.100 sum 0.022 -14.454 -0.273 14.456 Atomic orbital electron populations 1.69970 1.06046 1.26826 1.51223 1.25009 0.94919 0.99496 0.95172 0.86373 0.80339 0.82928 0.77487 1.19469 1.20977 1.20976 1.21226 0.94311 0.89116 1.50042 0.90657 1.19225 0.94016 0.90193 0.99344 1.21860 0.90904 0.81857 0.73120 1.90545 1.18090 1.83741 1.49568 1.48972 1.06570 1.05229 1.76552 1.22321 0.83823 0.94796 1.00859 1.22530 0.95377 0.95506 1.01155 1.23833 0.98146 0.95319 0.97087 1.23872 1.02765 0.83029 0.92806 1.89728 1.78494 1.35069 1.26835 1.23798 0.98009 0.87660 0.92956 1.21644 0.93447 0.83803 1.01880 0.92942 0.93507 0.93482 0.91637 0.89751 0.89878 0.89526 0.89761 0.88772 0.88808 0.89781 0.91495 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.89 8.92 -34.44 -0.31 -15.20 16 8 H 0.08 2.31 6.75 -52.49 -0.35 1.95 16 9 C 0.01 0.29 4.46 -29.04 -0.13 0.16 16 10 C 0.53 12.45 7.84 -10.99 -0.09 12.37 16 11 O -0.54 -14.59 15.79 5.56 0.09 -14.50 16 12 N -0.64 -11.43 3.34 -170.65 -0.57 -12.00 16 13 C 0.11 1.48 6.72 -2.19 -0.01 1.47 16 14 C -0.11 -1.17 6.44 -25.03 -0.16 -1.33 16 15 C -0.14 -1.60 1.00 -154.52 -0.16 -1.75 16 16 C 0.05 0.54 8.47 36.94 0.31 0.85 16 17 O -0.38 -4.50 12.46 -35.23 -0.44 -4.94 16 18 C 0.05 0.52 8.55 36.93 0.32 0.84 16 19 C 0.12 1.69 6.38 -3.58 -0.02 1.67 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.05 1.22 7.86 -51.93 -0.41 0.81 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.23 7.48 -51.93 -0.39 0.84 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 27 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 28 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.09 0.80 8.12 -51.93 -0.42 0.37 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -33.33 271.20 -5.95 -39.28 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.48 Total: -3.95 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.35 Total: 0.54 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.17 Total: -37.65 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.35 Total: -19.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.33 -5.95 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.038 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds