Wall clock time and date at job start Thu Apr 9 2020 11:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 O 1.21282 * 119.99595 * 359.97438 * 10 9 7 12 12 N 1.34773 * 119.99843 * 179.97438 * 10 9 7 13 13 C 1.47544 * 125.66384 * 359.69271 * 12 10 9 14 14 C 1.55415 * 104.89608 * 155.98956 * 13 12 10 15 15 C 1.53803 * 101.29312 * 35.91625 * 14 13 12 16 16 C 1.52606 * 115.99190 * 95.65524 * 15 14 13 17 17 O 1.44468 * 85.02679 * 95.89349 * 16 15 14 18 18 C 1.44474 * 93.60413 * 23.15966 * 17 16 15 19 19 C 1.47378 * 125.65682 * 179.97438 * 12 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.09004 * 110.33150 * 274.98681 * 13 12 10 24 24 H 1.09002 * 110.33008 * 37.21094 * 13 12 10 25 25 H 1.08998 * 111.25769 * 277.84762 * 14 13 12 26 26 H 1.09000 * 110.95464 * 153.85075 * 14 13 12 27 27 H 1.08998 * 113.94291 * 209.91297 * 16 15 14 28 28 H 1.08993 * 113.94565 * 341.87426 * 16 15 14 29 29 H 1.09004 * 113.94087 * 222.82211 * 18 17 16 30 30 H 1.09003 * 113.94255 * 90.86094 * 18 17 16 31 31 H 1.09001 * 109.98799 * 301.41529 * 19 12 10 32 32 H 1.08999 * 109.98969 * 62.72442 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 8 3.4226 -3.4230 -0.0166 12 7 1.7809 -4.9153 -0.0127 13 6 0.3640 -5.3267 -0.0012 14 6 0.3572 -6.7533 -0.6176 15 6 1.6761 -7.3244 -0.0698 16 6 1.5657 -8.1605 1.2021 17 8 1.5389 -9.2927 0.3052 18 6 2.2010 -8.5788 -0.7622 19 6 2.6234 -6.1245 -0.0190 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 -0.0151 -5.3507 1.0205 24 1 -0.2323 -4.6482 -0.6113 25 1 0.3705 -6.7133 -1.7067 26 1 -0.4968 -7.3285 -0.2598 27 1 2.4511 -8.1196 1.8365 28 1 0.6367 -8.0094 1.7516 29 1 1.7679 -8.7545 -1.7470 30 1 3.2871 -8.6701 -0.7483 31 1 3.2705 -6.1231 -0.8962 32 1 3.2258 -6.1637 0.8886 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:33 Heat of formation + Delta-G solvation = -70.970968 kcal Electronic energy + Delta-G solvation = -15554.583186 eV Core-core repulsion = 12901.414832 eV Total energy + Delta-G solvation = -2653.168355 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.13320 -40.25434 -37.52354 -35.14295 -32.62208 -30.98594 -30.22903 -27.61750 -26.81404 -24.91861 -23.96780 -20.41854 -19.82984 -18.60972 -17.69019 -17.59169 -16.80502 -16.76184 -16.51779 -16.30319 -15.64838 -15.05018 -14.37403 -14.23675 -13.81864 -13.62428 -13.22722 -13.16178 -12.81014 -12.71594 -12.59278 -12.41432 -12.06614 -11.68105 -11.51687 -11.42124 -10.65305 -10.64193 -10.54139 -9.63079 -8.27784 -6.35568 1.38731 1.39274 1.54362 1.80034 2.09167 2.42722 2.68695 3.07163 3.15632 3.31785 3.64143 4.07862 4.20556 4.26297 4.41484 4.44731 4.57490 4.65050 4.66530 4.77214 4.90467 5.00861 5.01319 5.05899 5.10190 5.17268 5.22772 5.44251 5.71789 6.02876 6.55740 6.78331 7.30106 7.40333 8.84627 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.067867 B = 0.005711 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.470637 B = 4901.539273 C = 5144.624091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.018 3.982 10 C 0.529 3.471 11 O -0.588 6.588 12 N -0.630 5.630 13 C 0.095 3.905 14 C -0.095 4.095 15 C -0.138 4.138 16 C 0.053 3.947 17 O -0.398 6.398 18 C 0.058 3.942 19 C 0.112 3.888 20 H 0.268 0.732 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 -16.612 -0.390 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.021 4.021 10 C 0.320 3.680 11 O -0.468 6.468 12 N -0.365 5.365 13 C -0.027 4.027 14 C -0.132 4.132 15 C -0.138 4.138 16 C -0.023 4.023 17 O -0.317 6.317 18 C -0.019 4.019 19 C -0.011 4.011 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.943 -16.567 -0.371 16.598 hybrid contribution 0.494 1.292 0.044 1.384 sum -0.450 -15.274 -0.326 15.284 Atomic orbital electron populations 1.70034 1.07117 1.28131 1.51013 1.25796 0.95880 1.02743 0.94308 0.85387 0.78528 0.78709 0.78355 1.20076 1.19583 1.19572 1.21404 0.93632 0.91313 1.51454 0.92869 1.19003 0.94014 0.90547 0.98515 1.21299 0.89680 0.83407 0.73581 1.90509 1.19317 1.84902 1.52080 1.48825 1.09142 1.04550 1.73958 1.22637 0.81278 0.96817 1.01995 1.22523 0.96172 0.93036 1.01508 1.23875 0.97282 0.94114 0.98573 1.24000 1.03862 0.81982 0.92485 1.89726 1.78814 1.35659 1.27527 1.23951 0.98793 0.85836 0.93318 1.21869 0.93963 0.83608 1.01643 0.92282 0.94253 0.94168 0.90337 0.90574 0.89101 0.86912 0.89138 0.87440 0.87095 0.88734 0.91874 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 13.29 21.45 0.28 -53.87 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -32.50 8.92 25.60 0.23 -32.27 16 8 H 0.05 3.39 6.75 -2.91 -0.02 3.37 16 9 C 0.02 0.98 4.46 29.10 0.13 1.11 16 10 C 0.53 25.50 7.84 87.66 0.69 26.18 16 11 O -0.59 -32.64 15.79 -3.03 -0.05 -32.69 16 12 N -0.63 -22.53 3.34 -812.20 -2.71 -25.24 16 13 C 0.09 2.54 6.72 87.01 0.58 3.13 16 14 C -0.09 -1.78 6.44 31.70 0.20 -1.58 16 15 C -0.14 -2.72 1.00 -52.19 -0.05 -2.77 16 16 C 0.05 0.95 8.47 71.84 0.61 1.56 16 17 O -0.40 -8.14 12.46 -148.98 -1.86 -10.00 16 18 C 0.06 0.96 8.55 71.84 0.61 1.57 16 19 C 0.11 3.15 6.38 86.20 0.55 3.70 16 20 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 21 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 22 H 0.04 2.15 7.86 -2.39 -0.02 2.13 16 23 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.08 2.18 7.48 -2.39 -0.02 2.17 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.11 1.62 8.06 -2.39 -0.02 1.60 16 27 H 0.09 1.51 8.00 -2.39 -0.02 1.49 16 28 H 0.11 1.64 8.12 -2.39 -0.02 1.62 16 29 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 32 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 Total: -1.00 -72.34 271.20 2.81 -69.52 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.10 Total: 2.89 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.02 Total: 1.76 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.43 Total: -79.11 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.90 Total: -42.68 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.34 2.81 -69.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.449 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds