Wall clock time and date at job start Thu Apr 9 2020 11:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47235 * 2 1 4 4 C 1.53003 * 109.46956 * 120.00051 * 2 1 3 5 5 C 1.52995 * 109.47289 * 185.00127 * 4 2 1 6 6 C 1.53003 * 109.47289 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28130 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 N 1.46900 * 109.47193 * 239.99701 * 2 1 3 10 10 C 1.46891 * 110.99869 * 85.00224 * 9 2 1 11 11 C 1.53003 * 109.47211 * 180.02562 * 10 9 2 12 12 C 1.53002 * 109.47410 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47447 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99508 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00306 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00079 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99964 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47461 * 89.99721 * 17 15 13 19 19 H 1.48501 * 109.46988 * 210.00289 * 17 15 13 20 20 H 1.48503 * 109.46632 * 329.99487 * 17 15 13 21 21 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46962 * 300.00339 * 1 2 3 23 23 H 1.09000 * 109.46350 * 59.99830 * 1 2 3 24 24 H 1.08999 * 109.47309 * 64.99443 * 4 2 1 25 25 H 1.09005 * 109.46839 * 304.99723 * 4 2 1 26 26 H 1.08999 * 109.47504 * 59.99435 * 5 4 2 27 27 H 1.09005 * 109.46851 * 299.99589 * 5 4 2 28 28 H 1.09002 * 115.54973 * 330.57913 * 6 5 4 29 29 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 30 30 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 31 31 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 32 32 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 33 33 H 1.00902 * 110.99723 * 321.04654 * 9 2 1 34 34 H 1.08997 * 109.47443 * 299.99860 * 10 9 2 35 35 H 1.09002 * 109.47325 * 59.99960 * 10 9 2 36 36 H 1.09001 * 109.47177 * 299.99949 * 11 10 9 37 37 H 1.09002 * 109.47013 * 59.99764 * 11 10 9 38 38 H 1.09001 * 109.46911 * 300.00115 * 12 11 10 39 39 H 1.09002 * 109.47222 * 59.99896 * 12 11 10 40 40 H 0.96997 * 119.99791 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 4.9746 -2.5543 2.3580 8 6 5.5706 -1.2419 2.8711 9 7 2.0197 -0.6926 -1.1994 10 6 2.0825 0.2225 -2.3468 11 6 2.5951 -0.5333 -3.5744 12 6 2.6600 0.4195 -4.7697 13 6 3.1643 -0.3250 -5.9790 14 1 3.4132 -1.3732 -5.9027 15 6 3.3068 0.3315 -7.1829 16 7 3.7474 -0.3182 -8.2381 17 14 2.8756 2.1443 -7.3150 18 1 4.0768 2.9624 -7.0100 19 1 2.4099 2.4432 -8.6931 20 1 1.7971 2.4683 -6.3469 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 3.8532 0.4369 1.3574 27 1 3.9994 -1.0729 0.4261 28 1 3.3871 -1.3524 3.4090 29 1 4.8790 -3.3754 3.0684 30 1 5.2032 -2.8440 1.3324 31 1 6.1915 -0.6681 2.1831 32 1 5.8671 -1.1996 3.9192 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6162 -2.5525 35 1 2.7589 1.0461 -2.1181 36 1 3.5904 -0.9274 -3.3690 37 1 1.9184 -1.3567 -3.8029 38 1 1.6645 0.8132 -4.9749 39 1 3.3365 1.2432 -4.5415 40 1 3.8481 0.1439 -9.0850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379624473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:39 Heat of formation + Delta-G solvation = -11.318652 kcal Electronic energy + Delta-G solvation = -15225.955697 eV Core-core repulsion = 12847.040250 eV Total energy + Delta-G solvation = -2378.915447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.24359 -37.00699 -34.29065 -32.41403 -30.78562 -29.17162 -26.16843 -24.24549 -22.44750 -22.11971 -20.80169 -20.35277 -19.77698 -16.70900 -15.87716 -15.35344 -15.14346 -14.65204 -14.22745 -13.99536 -13.45399 -13.17343 -12.96967 -12.66197 -12.15985 -11.92583 -11.72195 -11.60420 -11.51541 -11.25904 -10.99822 -10.90165 -10.78495 -10.70617 -10.18876 -9.92221 -9.85621 -9.69341 -9.51196 -9.13768 -8.50740 -8.12981 -6.01150 -3.98694 3.32603 3.39591 3.43459 3.73411 4.39398 4.47864 4.51884 4.84668 4.88822 5.00601 5.08167 5.29686 5.32881 5.33864 5.44264 5.54656 5.62411 5.67213 5.76107 5.81030 5.84287 5.91428 5.99405 6.02343 6.06155 6.16320 6.23626 6.28903 6.50892 6.60854 6.64539 6.96038 7.29721 7.39641 7.48485 7.65632 7.83893 8.58468 9.04560 9.61666 11.12506 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.004527 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.673686 B = 6183.362356 C = 6696.106927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H 0.074 0.926 4 C -0.100 4.100 5 C -0.083 4.083 6 C -0.151 4.151 7 C -0.181 4.181 8 C -0.186 4.186 9 N -0.683 5.683 10 C 0.057 3.943 11 C -0.099 4.099 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.338 0.662 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 0.065 21.702 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.031 4.031 3 H 0.092 0.908 4 C -0.138 4.138 5 C -0.121 4.121 6 C -0.169 4.169 7 C -0.218 4.218 8 C -0.223 4.223 9 N -0.313 5.313 10 C -0.072 4.072 11 C -0.137 4.137 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.463 0.174 21.671 21.811 hybrid contribution -1.152 1.041 -0.425 1.610 sum -3.615 1.215 21.246 21.585 Atomic orbital electron populations 1.22506 0.97704 1.01968 1.01946 1.21609 0.92109 0.98148 0.91248 0.90783 1.21522 0.95604 1.00610 0.96093 1.21106 0.95423 0.99601 0.95934 1.22412 0.92669 1.01503 1.00315 1.23025 1.04709 0.91564 1.02507 1.22950 0.96458 1.01379 1.01533 1.60637 1.56845 1.09900 1.03940 1.22158 0.98863 0.95546 0.90609 1.21438 1.00782 0.98558 0.92947 1.19543 0.96296 0.95350 0.93903 1.21164 1.43425 0.98322 0.92710 0.91044 1.25044 0.94699 0.98102 0.95757 1.69922 1.46994 1.36606 1.00925 0.86766 0.79293 0.85967 0.77169 1.20297 1.21443 1.19114 0.92533 0.92456 0.92646 0.91987 0.92445 0.92380 0.90068 0.88458 0.89367 0.88516 0.88820 0.89330 0.84399 0.95916 0.91686 0.92036 0.93114 0.96919 0.97109 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 2 C 0.08 0.91 2.59 -67.71 -0.18 0.73 16 3 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 4 C -0.10 -1.02 4.85 -26.73 -0.13 -1.15 16 5 C -0.08 -0.90 5.38 -26.73 -0.14 -1.05 16 6 C -0.15 -1.47 5.73 -90.61 -0.52 -1.99 16 7 C -0.18 -1.75 10.18 -26.73 -0.27 -2.02 16 8 C -0.19 -1.74 10.25 -26.73 -0.27 -2.02 16 9 N -0.68 -9.37 5.70 -106.73 -0.61 -9.97 16 10 C 0.06 0.93 5.48 -3.83 -0.02 0.91 16 11 C -0.10 -2.00 5.41 -26.73 -0.14 -2.14 16 12 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 14 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 17 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 21 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.63 7.45 -51.93 -0.39 0.24 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.04 7.49 -51.93 -0.39 0.65 16 28 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.34 4.47 8.47 -39.29 -0.33 4.14 16 34 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 35 H 0.06 1.07 8.06 -51.93 -0.42 0.66 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -30.11 321.39 -9.28 -39.39 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.73 Total: 0.25 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -1.88 Total: -24.31 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.16 Total: -37.60 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.11 -9.28 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379624473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.073 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds