Wall clock time and date at job start Thu Apr 9 2020 11:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47235 * 2 1 4 4 C 1.53003 * 109.46956 * 120.00051 * 2 1 3 5 5 C 1.52995 * 109.47289 * 185.00127 * 4 2 1 6 6 C 1.53003 * 109.47289 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28130 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 N 1.46900 * 109.47193 * 239.99701 * 2 1 3 10 10 C 1.46891 * 110.99869 * 85.00224 * 9 2 1 11 11 C 1.53003 * 109.47211 * 180.02562 * 10 9 2 12 12 C 1.53002 * 109.47410 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47447 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99508 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00306 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00079 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99964 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47461 * 89.99721 * 17 15 13 19 19 H 1.48501 * 109.46988 * 210.00289 * 17 15 13 20 20 H 1.48503 * 109.46632 * 329.99487 * 17 15 13 21 21 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46962 * 300.00339 * 1 2 3 23 23 H 1.09000 * 109.46350 * 59.99830 * 1 2 3 24 24 H 1.08999 * 109.47309 * 64.99443 * 4 2 1 25 25 H 1.09005 * 109.46839 * 304.99723 * 4 2 1 26 26 H 1.08999 * 109.47504 * 59.99435 * 5 4 2 27 27 H 1.09005 * 109.46851 * 299.99589 * 5 4 2 28 28 H 1.09002 * 115.54973 * 330.57913 * 6 5 4 29 29 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 30 30 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 31 31 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 32 32 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 33 33 H 1.00902 * 110.99723 * 321.04654 * 9 2 1 34 34 H 1.08997 * 109.47443 * 299.99860 * 10 9 2 35 35 H 1.09002 * 109.47325 * 59.99960 * 10 9 2 36 36 H 1.09001 * 109.47177 * 299.99949 * 11 10 9 37 37 H 1.09002 * 109.47013 * 59.99764 * 11 10 9 38 38 H 1.09001 * 109.46911 * 300.00115 * 12 11 10 39 39 H 1.09002 * 109.47222 * 59.99896 * 12 11 10 40 40 H 0.96997 * 119.99791 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0747 -1.3341 2.5634 7 6 4.9746 -2.5543 2.3580 8 6 5.5706 -1.2419 2.8711 9 7 2.0197 -0.6926 -1.1994 10 6 2.0825 0.2225 -2.3468 11 6 2.5951 -0.5333 -3.5744 12 6 2.6600 0.4195 -4.7697 13 6 3.1643 -0.3250 -5.9790 14 1 3.4132 -1.3732 -5.9027 15 6 3.3068 0.3315 -7.1829 16 7 3.7474 -0.3182 -8.2381 17 14 2.8756 2.1443 -7.3150 18 1 4.0768 2.9624 -7.0100 19 1 2.4099 2.4432 -8.6931 20 1 1.7971 2.4683 -6.3469 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 3.8532 0.4369 1.3574 27 1 3.9994 -1.0729 0.4261 28 1 3.3871 -1.3524 3.4090 29 1 4.8790 -3.3754 3.0684 30 1 5.2032 -2.8440 1.3324 31 1 6.1915 -0.6681 2.1831 32 1 5.8671 -1.1996 3.9192 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6162 -2.5525 35 1 2.7589 1.0461 -2.1181 36 1 3.5904 -0.9274 -3.3690 37 1 1.9184 -1.3567 -3.8029 38 1 1.6645 0.8132 -4.9749 39 1 3.3365 1.2432 -4.5415 40 1 3.8481 0.1439 -9.0850 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379624473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:56:38 Heat of formation + Delta-G solvation = -28.620110 kcal Electronic energy + Delta-G solvation = -15226.705944 eV Core-core repulsion = 12847.040250 eV Total energy + Delta-G solvation = -2379.665695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15676 -37.96661 -35.96956 -34.24166 -32.18854 -30.28859 -27.84667 -25.19172 -23.77839 -23.18230 -22.10664 -21.22545 -21.08015 -18.90914 -16.83619 -16.44305 -16.38415 -16.07525 -15.63491 -15.17532 -14.80501 -14.35097 -14.29833 -13.95438 -13.68705 -13.30733 -12.93483 -12.64957 -12.55443 -12.50824 -12.35451 -12.08499 -11.87830 -11.78372 -11.66099 -11.51307 -11.37464 -11.18850 -10.94344 -10.76720 -10.64127 -9.22104 -8.29743 -6.34142 1.35560 1.37469 1.49706 2.36166 2.97903 3.05440 3.29947 3.72036 4.06613 4.11008 4.16995 4.22629 4.27215 4.39107 4.46981 4.53154 4.66536 4.69850 4.81775 4.82641 4.87861 4.93278 5.00434 5.02799 5.11958 5.12569 5.18344 5.26427 5.30279 5.34619 5.44373 5.53462 5.62094 5.66038 5.66544 6.20544 6.30651 6.56645 6.74235 7.30540 8.87393 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.004527 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.673686 B = 6183.362356 C = 6696.106927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.070 0.930 4 C -0.093 4.093 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.187 4.187 8 C -0.186 4.186 9 N -0.687 5.687 10 C 0.072 3.928 11 C -0.090 4.090 12 C -0.010 4.010 13 C -0.535 4.535 14 H 0.028 0.972 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.246 1.246 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.341 0.659 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 1.702 23.772 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.170 4.170 7 C -0.224 4.224 8 C -0.223 4.223 9 N -0.318 5.318 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.573 4.573 14 H 0.047 0.953 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.169 1.169 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.618 1.800 23.768 24.109 hybrid contribution -0.746 0.416 -1.071 1.370 sum -4.364 2.216 22.697 23.219 Atomic orbital electron populations 1.22443 0.96485 1.02402 1.02273 1.21676 0.93061 0.97825 0.90513 0.91160 1.21473 0.94942 1.00578 0.96091 1.21034 0.95987 0.99265 0.95527 1.22430 0.93090 1.01262 1.00173 1.23055 1.05032 0.92147 1.02190 1.23015 0.96176 1.00878 1.02229 1.60580 1.57687 1.09781 1.03785 1.21864 0.98854 0.95220 0.89790 1.21264 1.00193 0.97968 0.93430 1.19490 0.96187 0.95753 0.93361 1.21529 1.43598 0.97034 0.95092 0.95314 1.26078 0.94438 1.03857 0.95139 1.70081 1.48458 1.39093 1.01774 0.85594 0.79908 0.78940 0.77805 1.19086 1.20865 1.16938 0.92065 0.90760 0.93669 0.92041 0.90492 0.92695 0.92521 0.87055 0.88104 0.89842 0.89546 0.87832 0.84047 0.95293 0.91604 0.93468 0.93611 0.96250 0.96385 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 9.16 71.98 0.66 -2.54 16 2 C 0.08 1.64 2.59 44.92 0.12 1.76 16 3 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 4 C -0.09 -1.67 4.85 30.59 0.15 -1.53 16 5 C -0.08 -1.65 5.38 30.59 0.16 -1.48 16 6 C -0.15 -2.69 5.73 -10.79 -0.06 -2.75 16 7 C -0.19 -3.42 10.18 30.59 0.31 -3.11 16 8 C -0.19 -3.23 10.25 30.60 0.31 -2.91 16 9 N -0.69 -18.00 5.70 -491.58 -2.80 -20.80 16 10 C 0.07 2.25 5.48 86.31 0.47 2.72 16 11 C -0.09 -3.63 5.41 30.60 0.17 -3.47 16 12 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 13 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 14 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 15 C 0.00 0.08 5.47 84.65 0.46 0.54 16 16 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 17 Si 0.95 45.04 27.47 68.60 1.88 46.92 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 21 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 22 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.44 7.49 -2.38 -0.02 1.42 16 28 H 0.11 1.69 8.08 -2.39 -0.02 1.67 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.34 8.61 8.47 -89.69 -0.76 7.85 16 34 H 0.03 0.88 7.44 -2.39 -0.02 0.86 16 35 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 39 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 40 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -65.41 321.39 2.65 -62.75 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.15 Total: 16.78 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 3.12 Total: -44.77 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.50 Total: -81.69 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -65.41 2.65 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379624473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.134 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds